Neoarius graeffei (lesser salmon catfish): 132897145
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Entry
132897145 CDS
T10798
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132897145 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132897145 (hbs1l)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132897145 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GUCT
Motif
Other DBs
NCBI-GeneID:
132897145
NCBI-ProteinID:
XP_060794515
LinkDB
All DBs
Position
13:complement(76221655..76337981)
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AA seq
675 aa
AA seq
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MSRHRNVRGYNYDEDFEDDDIYGHSVDDDYCISPATAAQFIYSRQDSRQSRQVEPLEEEE
HEEEVEMPTSPAVLQTLNPLMQGRLYSCLDQMRAVLGDSVPDSTLSEAALKYDCDPHRAL
DSILSAESGSSTPQPAAPKTQPPPQKAKPRELPETRLESEVVPKVARMTVSGKKQTMGFD
VPSSEENGVSPSVRRRPSPEVTAVAAPETPPKAACVAEESVTPTPPRSTSKNKQQLNIRA
ELEQRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKAGKASFAY
AWVLDETGEERDRGVTMDVGLTKFETNSKVVTLMDAPGHKDFIPNMITGAAQADVAVLVV
DASRGEFEAGFEAGGQTREHALLVRSLGVTQLAIAVNKMDQVNWQQSRFQEIISKLGQFL
KQAGFKESDVYYVPTSGLSGQNLTTKSAEAALTSWYKGPCLLEQIDSFKAPQRSVEKPFR
LCVSDVFKDQGSGFCVTGKIEAGFVQTGDRVLAMPPNETCTVKGISLHDEQLDWAAAGDH
ISLTVTGMDIIKINVGCVFCDPKEPIRACTRFRARILLFNIEVPITQGFPVLLHYQTVSE
PATIRKLVSTLHKTSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKELGRFMLRY
VGSTIAAGVVTEIKE
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccataggaatgttcgaggttataattatgatgaagattttgaggatgacgac
atttatggacattctgtggatgatgattactgcatctcgcctgcgacggctgctcagttt
atttactcgcgtcaggactcgcggcagtcgcggcaggtagagccactggaggaggaagag
cacgaggaagaggtggagatgccgacctcgcccgccgtcctgcagacactcaacccgctg
atgcaaggtcggctgtactcgtgtttggaccagatgagggcggtcctgggagactctgtg
cccgactccactctgagcgaggcggctctgaagtacgactgcgatcctcacagagctctc
gactccattctgtctgccgaaagcggcagcagcaccccgcagccagctgcgcccaaaacc
cagcctccaccacagaaagcgaaaccccgcgagcttcccgagactcgtctcgaatccgag
gtggttccgaaagtggcccggatgaccgtctcgggaaagaagcagaccatgggcttcgac
gtgccgagctccgaggagaatggcgtcagcccatctgtacgcagacgtccgagcccagaa
gtgactgcagtcgcagctccggagactccacccaaggcggcgtgtgtggcggaggaatcg
gtgaccccgaccccgccgcgctccaccagcaaaaataaacagcagctcaacatccgcgcc
gagctggagcagaggcagggagggaaaccgctcctcaacctcgtcgtcatcggtcatgtg
gatgccgggaagagcacgctcatggggcacctcttatacctgctggggaacgtcaataaa
cgcaccatgcacaagtacgagcaggaggccaagaaagctggcaaggcgtctttcgcttac
gcctgggtgctggatgagaccggagaggagcgagacagaggggtgaccatggatgtgggc
ctgaccaagtttgagaccaactccaaagttgtgactctgatggatgcaccaggacacaaa
gacttcattcctaatatgatcactggagcagcacaggcagatgtagccgtgctggtggtg
gatgccagtcggggagagttcgaggctgggtttgaggccggtggtcagaccagggaacac
gctctcctcgttcgatctcttggtgtcacacaactcgctatcgctgtcaacaagatggac
caggtgaactggcagcagtcgaggttccaagaaataatttccaaacttggccagtttctg
aagcaggccggtttcaaggagtctgatgtgtattacgtccccacgagtggtctttcagga
cagaatctcaccaccaagagcgcagaagcagcgctcacttcctggtacaaaggcccgtgt
ctcctggaacagatagactcgtttaaagctccccagagatccgtggagaagcccttcaga
ctctgtgtgtcagatgtgtttaaagatcagggatccggcttctgtgtgacgggaaaaatc
gaagctggcttcgttcagaccggggaccgagtgctggccatgcctcccaacgagacctgc
actgtgaaaggtatcagtcttcatgatgagcagttagactgggcggctgccggagaccac
atcagtctgaccgtcacaggaatggacataataaagatcaatgttggctgtgtgttctgt
gaccccaaggagcccattagggcctgcactcgtttccgagcccgaatcctgctgtttaac
attgaagtgccaataacacaaggcttccctgttctgttgcattatcagaccgtgagcgag
cccgctaccatcaggaagctcgtcagtacgttacacaaaaccagcggcgaggttctaaaa
aagaaacccaaatgtctgagtaaaggccagaatgctgtggtggagattcagactcagaga
cctgtggctctggagctctataaggactataaagaactcgggcgcttcatgctgcgttat
gtgggttccaccatcgctgctggggtcgtcacagagatcaaagaataa
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