Neoarius graeffei (lesser salmon catfish): 132897216
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Entry
132897216 CDS
T10798
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132897216 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132897216 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132897216 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ngra00535
]
132897216 (col9a3)
Proteoglycans [BR:
ngra00535
]
Extracellular matrix (ECM) proteoglycans
Others
132897216 (col9a3)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
132897216
NCBI-ProteinID:
XP_060794671
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Position
13:complement(5563436..5636701)
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AA seq
644 aa
AA seq
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MVRPNLDLARGNALDEKEDMVVVRWPASCMNIGWNPMSCNTAVDKADGLPGPDGPRGTDG
PPGPVGDPGPPGPTGPPGRGRPGAPGLSGANGLPGGVGPQGPPGPEGFPGLPGLPGPDGP
PGLPGVLPEGNGELLCPAICPPGPPGPPGMPGFKGHTGHKGEKGELGKDGPKGQQGPPGV
PGIPGSVGLQGPRGLIGLPGPVGSVGDRGLPGFRGKPGIPGVIGKTGDAGEKGPVGFKGP
KGEIGKIGPKGRPGPPGPKGEPGMPGRDGKDGTQGYDGEKGDGGRPGVSGEKGPNGVPGL
PGKAGVKGAKGVVGDQGKTGEAGPAGEPGIPGEIGIPGERGEAGPRGVTGGIGLTGNPGP
QGVKGFQGIKGAIGDPGLPGPTGLRGDFGDRGPTGAAGPKGDIGLAGSDGLPGENGEAGP
FGPPGQKGAPGKHGELGPKGVTGPQGETGARGLPGKPGLMGFHGESGPPGVSGKTGVPGK
LASEQHIRELCGALIDDQIAKLAAHLRRPLSPGAVGRPGLAGPPGKRGEAGVMGLPGARG
PPGYRGLPGDLGDPGPRGDAGENGDKGPVGKAIDGLTGDQGEAGLQGVHGIVKDGRDGAP
GDPGEPGEPGRAGRTGHQGPPGICDTTACQGAAPHGKSSNPKNH
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgtccaaatcttgatctggcacgcggcaatgcacttgatgagaaagaagacatg
gttgtagtcaggtggccagcaagctgcatgaatattggctggaatccaatgtcatgtaac
actgcggtggataaagcagatggtttgccgggtcctgatgggcctcggggaacagatgga
cctccaggaccagtcggtgatccaggacctcccggaccaactgggcctcctggcagaggg
agacctggagctcctgggctgtctggagctaacggattgcctggtggtgtaggacctcag
ggacccccaggaccagaagggtttccagggcttccaggtcttccaggtccagacgggccg
cctggactacctggagtacttcctgagggaaatggagagttactgtgtcccgctatatgt
cccccgggacccccagggcctcctggaatgcccggattcaagggacatacaggacacaaa
ggagaaaaaggagaactcgggaaagatggaccgaagggtcagcaaggcccacccggggtc
cctggaatcccaggatctgttggtctacaggggcctcgaggtttaataggacttccaggt
ccagtgggatccgtcggagaccgaggtttgccaggttttcggggcaagcctggtattcct
ggtgtcatcggaaaaacaggtgatgccggagagaaaggacctgtgggttttaaaggacct
aaaggagaaatcggaaaaataggtcctaaaggtcggcctggacctccaggccccaaagga
gaaccaggcatgccaggcagagatggcaaagatggcactcagggatacgatggtgaaaaa
ggtgatggagggcggccaggagtttctggagagaaagggcctaatggtgtacctggtttg
ccaggaaaggctggagtaaaaggtgccaaaggagtagttggcgatcaaggaaagacggga
gaagcaggaccagctggagagccaggtattcctggtgagattggtattccaggagaaaga
ggtgaagctggacccagaggtgtcactggaggcatcggcctaactggaaatccaggacct
caaggagtcaaaggattccagggaattaaaggcgctattggagatcccggtcttccgggt
ccgaccggactcagaggagactttggagaccggggaccaacaggagctgcaggaccaaaa
ggcgacattggactggctggaagtgacggcttgcccggagagaacggagaagcgggtccg
ttcggtcctcctggccaaaaaggagcgccagggaaacatggcgagctgggtccgaaagga
gtgacggggccacagggggagactggagcaagagggctgcctggaaaacccggtttgatg
ggcttccatggagaatcaggccctcctggtgtctctggaaagactggtgttcctggaaag
ctggcaagcgaacaacatatcagagaactgtgtggcgcactgattgatgaccagattgcc
aagctggctgctcacctgaggagaccgttatctccgggagccgtgggtcgaccaggtctg
gctggacctcctggaaaacgaggagaagcaggagtgatgggacttcctggagctcgtggt
cccccaggatacagaggtcttccaggagatcttggagatcctggtcctagaggtgatgct
ggtgaaaatggtgataagggacctgttggaaaagccattgatgggctcactggagaccaa
ggagaagcaggtctccaaggagtacatggcattgttaaagatggacgtgatggtgcacct
ggagatcctggtgagcccggagaaccgggcagggcaggcaggacggggcatcaaggaccg
ccaggaatctgtgacacgacagcctgccagggcgcagcgcctcacgggaaatcatccaac
cctaaaaaccattaa
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