Neoarius graeffei (lesser salmon catfish): 132897935
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Entry
132897935 CDS
T10798
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03020
RNA polymerase
ngra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132897935 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
132897935 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngra03021
]
132897935 (polr2a)
03400 DNA repair and recombination proteins [BR:
ngra03400
]
132897935 (polr2a)
Enzymes [BR:
ngra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132897935 (polr2a)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
132897935 (polr2a)
DNA repair and recombination proteins [BR:
ngra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
132897935 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
132897935
NCBI-ProteinID:
XP_060795210
LinkDB
All DBs
Position
14:complement(9055220..9082425)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILAKSKGQPRKRLMHVYDLCKGKNICEGGEEMDNKFGVEQQENDEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDLILGMDPKY
ARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSSWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGASAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
LQNMATLKPSHKAFEKKFKFDYTNERALRRTLQEDVLKEVMSNAHVQSALEREFEKMKAD
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFHINPRTPTDLNPLRVVEGVQELSKKLVI
VNGDDPLSKQAQQNATLLLNIHLRATLCSRRMTEEFRLSSEAFEWLLGEIETKFNQSIVH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTENKKKTII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtccgtcacagaagggggcatcaag
taccccgagaccaccgaaggaggacgccccaaactgggcggcctcatggatcctcgtcag
ggggtcatcgagaggtccgggagatgccagacgtgtgcaggtaacatgacggaatgccca
ggtcacttcggtcacatcgagctggccaagcctgtctttcacgtcggcttcatcacaaag
atcatgaaagtcctccgctgtgtgtgcttcttttgctccaagctgctggttgatgcgaac
aaccccaaaatcaaagacatcctggccaagtcgaaaggtcagccacgaaagcgcctgatg
cacgtctacgatctgtgtaaaggtaaaaacatctgcgagggcggcgaggagatggacaac
aagttcggagtggagcagcaggagaacgacgaggacctcacgaaagaaaagggtcatggt
ggatgtgggcggtaccagcctcgtatccggcgctcgggtctggagctgtacgccgagtgg
aagcacgtgaacgaggactctcaggagaagaagattctcctcagtcctgagcgcgtgcac
gagatcttcaaacgcatctcagacgaggaagatctcatcctggggatggaccccaagtac
gcgcggcctgagtggatgatcgtcacggtgctgccggtaccgcctctttccgtcagaccg
gctgtggtcatgcagggttcagccaggaaccaggatgatttgacgcacaagttggctgac
attgtgaaaatcaataaccagctgcgacggaacgagcagagcggcgctgcagcgcacgtt
atcgcagaagacgtcaagctcctgcagttccacgtggccaccatggtggacaacgagctg
cccggtctgcctcgagcgatgcaaaaatcgggccgcccgctcaaatccatcaaacagagg
ctgaaggggaaagaaggcagagtgcgaggaaacctgatggggaagcgtgtggacttctct
gccaggactgtcatcacgcccgaccccaacttacagatcgaccaagtgggcgtgcctcgc
tccatcgctgcgaacatgaccttccctgagatcgtcacgccgtttaacatcgacagactc
caggagctggtgaggagaggaaacagccagtatcccggagccaaatacatcatccgcgat
aacggagaccgaattgaccttcgcttccacccgaagccgagtgaccttcaccttcagatc
ggctataaggtggagcggcacatgtgcgacggtgacatcgtcatctttaacagacagccc
actttgcacaaaatgtctatgatgggtcacagggttcgaatcctgccttggtctacgttt
cgactcaacctcagtgtaacgactccttacaacgctgacttcgatggagacgagatgaac
cttcacctgccccagtcacttgagacccgcgctgagattcaggagctggccatggtgccg
cggatgatcgtcacaccccagtccaacagacccgtcatgggtatcgtgcaggacacgctc
accgccgtgcgcaagttcacaaagcgagatgtcttcttagagaggggtgaagtgatgaat
ctgctgatgttcctgtcttcctgggatggcaaggtgccacagcctgctatcttaaagcca
cgcccactgtggactggaaaacagatcttcagcttgatcattccaggtcacattaacgtc
atccgtacgcacagcacgcatccggacgatgaagacagcggcccgtataagcacatctct
cctggagacacgaaggtgattgtggagaacggcgagctcatcatgggcatcctgtgtaag
aaatctctcggtgcgtccgccggttctctcgtccacatctcttacctggagatgggtcat
gacatcactcgccttttctactccaacattcagactgtcgtcaataactggctgctcatt
gagggtcactctattggtattggtgactctattgctgatgcaaagacatatcttgacatt
caaaatacgatcaagaaggccaagcaagatgtgatagaggtcatcgagaaagctcacaac
aatgaactggagcccactccaggtaacactctgagacagacctttgaaaatcaggtcaac
cgtatcctgaacgacgctcgagacaagacgggatcttctgctcagaagtcgctgtccgag
tacaacaactttaaatccatggtggtggctggatccaagggctccaaaattaatatctca
caggttattgctgtggtgggtcagcagaacgttgaaggaaaacgaatcccttttggcttc
aagcaccgcactcttcctcacttcatcaaggacgactacggtcctgagagcagggggttc
gtggagaactcgtacctcgccggtctgacgcccacggagttcttctttcacgccatggga
ggaagagagggtctgatcgatacggctgtgaaaactgccgagacgggctacatccagcgt
cgtctgatcaagtctatggagtcggttatggtgaaatacgatgccacagtgaggaactcg
attaaccaggtggtacagctgagatacggagaggatggcctggctggagaggctgtcgag
ctccagaacatggccacacttaaaccgtcccataaagcttttgagaagaagttcaagttt
gactacactaatgagcgagctctccggcgcacgctgcaggaagacgtgttgaaggaagtc
atgtccaatgcacatgtgcagagcgctctggagagggagtttgagaaaatgaaggcggac
cgagagatcttgagagccattttccccactggagacagtaaggtggtgctgccgtgcaat
ttggccagaatgatctggaatgcacagaagattttccacatcaaccccagaactccaaca
gatctcaaccctttaagagtggtggagggtgtgcaagagctgagtaagaagctggtgatt
gtgaacggtgacgatccgttaagcaagcaggcccagcagaacgccacgttgcttcttaac
atccaccttcgtgccaccttgtgctccagacgcatgactgaagagtttcgtctcagctcc
gaggccttcgagtggctcctgggagaaatcgagaccaagttcaaccagtcgattgttcac
ccgggtgagatggtgggtgctctggctgctcagtctctgggtgagcctgccactcagatg
accctgaacactttccactacgctggtgtgtctgctaagaacgtcaccctgggtgtgcct
cgactcaaagagctaatcaacatctcgaagcgtcccaagactccgtccctgacggtgttc
ctgctgggccaggcagcccgcgacgccgagcgcgccaaagacatcctgtgtcgcctggag
cacacgacgctgcgcaaggtcacagccaacactgctatctactacgaccccaacccccag
aacacggtcgtagccgaggatcaggagtgggtgaacgtttactacgagatgcctgatttt
gacgtgactcgcatctctccctggctgctgcgcatcgagcttgaccgcaagcacatgact
gaccgcaaactctccatggagcagatcgctgagaaaattaatgcaggttttggtgacgat
ctaaactgcatcttcaatgatgacaatgctgagaagctggtgctacgtatccgaatcatg
aacagtgacgagaacaagttccaggaggatgaagaggtggtggataagatggatgacgac
gtgtttctgcggtgcatcgagtccaacatgctgacggacatgaccctacagggcatcgag
cagatcagcaaggtgtacatgcatcttcctcaaaccgagaacaagaaaaagaccataatc
acagaagagggagagtttaaagctctacaggaatggattctcgagacggacggcgtgagt
ctgatgagagtcctcagcgagaaggacgtcgaccccgtccggaccacctccaacgacatt
gtagagatcttcactgtgctcggtattgaggcagtgcgcaaggctctggagagagagtta
taccatgtcatctccttcgacggttcttatgtgaactatcgccaccttgcactcctgtgc
gacaccatgacctgcagaggtcacctgatggccatcacccgtcacggcatcaacagacag
gacaccggcccgctcatgaagtgctcttttgaagagacggtggacgtcctgatggaagca
tcgtcccatggagaatgcgatcccatgaagggcgtgtctgaaaacatcatgctcgggcag
ctggctcctgcaggcaccggctgcttcgacctgctcctggatgctgagaaatgcaaatac
ggcatggagattcccaccaacatccccggcatcagtgtggctggaccaacgggaatgttc
tttggctccgcccctagccctatgagtggcatgtctccagccatgaccccgtggaacaca
ggggccactccggcttacggtgcatggtctcccagtgtgggaagcggaatgactccagga
gctgccggtttttcacccagtgctgcctccgatgccagcggcttctctccgggttactca
cccgcatggtctcctacccctggctctcctgggtctcctggtccagccagtccttacatt
ccctctccaggtggcgccatgtctccaaattactcccccacatctccagcgtacgagccg
cgatcccctggaggctacaccccacagagccctggctactctcccacctctccatcgtac
tctcccacctctccttcctactctcccaccagccccaactactccccaacctctccatcc
tactccccaacctctccatcctactctccaacatctccgtcttattccccgacctcccca
agttattcgcccacatcgccctcttactctccgacgtctccatcttattcccccacttct
ccatcttattctccgacgtctccatcctattctccgacttcaccctcttattcgccgacg
tctcccagctacagcccaacgtccccgtcgtattcgcccacctctccgtcgtactctccg
acttccccatcgtactctccaacctctccttcgtattccccgacgtcgccgtcttattcc
ccgacgtcccccagttacagcccaacctcgcccaattacacgccaacttcacccagctac
tcgcccacctctccgtcttacagccccacctcgccttcatactcgcccacgtctcctaat
tacacacccaccagcccgaactattcccccacgtctccgtcttactcccccacctctccg
tcttactccccatccagccctcggtacacgccccagtctcctacgtacaccccgagctcg
ccttcttacagcccgagctcaccatcctactcccccacgtctccaaaatacacccccacc
tctccgtcgtacagccccagctctccggaatacacgcccacttcgcccaagtactctccc
acttcgcccaagtactcgcccacgtctcctaaatacagccccacgtctccgacttactct
cccacgacacccaaatacagtcctacttctccgacgtactctccgacgtctccaacctac
accccgaccagccccaagtactcgcccacttcgccaacatactctccgacgtctccgaaa
tactccccgacttcaccaacgtactctcctactagtcccaaaggctcgacttacagcccg
acctcgcctgggtacagtccgacgtcgccgacctacagtccagccatcagccctgatgac
agcgatgaggaaaacaactga
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integrated database retrieval system
