Neoarius graeffei (lesser salmon catfish): 132898007
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Entry
132898007 CDS
T10798
Symbol
smarcd2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132898007 (smarcd2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngra03021
]
132898007 (smarcd2)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132898007 (smarcd2)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132898007 (smarcd2)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132898007 (smarcd2)
PBAF complex
132898007 (smarcd2)
GBAF(ncBAF) complex
132898007 (smarcd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
132898007
NCBI-ProteinID:
XP_060795325
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All DBs
Position
14:complement(15024414..15047935)
Genome browser
AA seq
492 aa
AA seq
DB search
MASRAAFPATPVMNPGMNSPGHPRMAAMNPAYRAMSNPANQYPRPGIPPGRNMPMGGMGS
MGSPMPGPSYGGTMTVRPSMPQTAMDPARKRLLQQQQVGGLMGPRRGLKRRKMADKVLPQ
RIRDLVPESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPITQKRKLRIYISNTCTPAKP
EGEESEKVASWELRVEGKLLEDPGKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPT
TQETDGFQVKRPGDVSVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRASIMQALWLYI
KNNKLQDCHEKEYINCNRYFRQIFACSRMRFSEIPMKLAGLLQHPDPIVINHVISVDPND
QKKMACFDIDVEVDDPLKSQMSSFLSSTTNQQEIAALEMKIHETIESINQLKTQRDFMLS
FSNNPQDFIQDWLKSQSRDLKLMTDTAGNPEEERKSEFYQAPWIQEAVGRYIFSKVQQRR
QELEQVLGIRLT
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccagagcggcgttccctgctaccccggtgatgaatcccgggatgaactctcct
ggacacccgcggatggcagcgatgaatccggcctaccgagcaatgtccaacccggctaac
cagtacccgcgtcctggcatccctcctggccgtaacatgcccatgggcgggatgggttcc
atgggttctccgatgcctgggccgtcgtatggtggcaccatgaccgttcggcccagcatg
ccccaaaccgcgatggacccggcgcgaaagagactcctgcagcagcaacaggtggggggg
ttgatgggacctcggagaggtctgaaacgacgcaaaatggctgacaaagttctaccccag
aggatccgggatctggttcctgagtctcaggcctacatggaccttctggcgtttgagagg
aagctggaccagaccattgctcgcaagcgcatggaaatccaggaggccatcaagaagcct
ataacgcaaaagcgtaagctgaggatctacatctcaaacacctgtacacctgccaaacct
gagggggaggagtccgagaaagtggcatcatgggagctcagagtggagggcaaactcctg
gaggatcccgggaaacagaagagaaagttttcttccttctttaaaagcctggtcattgag
ctggataaggagctgtatggtccagacaaccacctggtggagtggcacaggatgcccacc
actcaggagacggatggttttcaggtgaagcggcccggagacgtgagtgtgaaatgcacg
ctgctgctcatgctagaccaccagccaccacagtacaaactggacccgcggttagcgcgt
cttctgggtgttcacactcagacccgagccagcatcatgcaggcgctctggctctacatc
aagaacaacaagctgcaggactgccatgagaaagaatacatcaactgcaaccgctacttc
agacagatcttcgcctgctccagaatgagattctcagagatccccatgaagctggcagga
ctactgcagcacccagaccctattgtcatcaaccacgtcatcagtgtggacccgaatgac
cagaagaagatggcatgttttgacatcgacgtagaagtagatgatccgctgaagagccag
atgagcagcttcttgtcctccaccaccaaccagcaggaaatcgcagccctggaaatgaag
atccatgaaaccattgagtcaataaaccagctgaagacacagcgggacttcatgctgagc
ttcagcaacaaccctcaggacttcattcaggactggctcaagtctcagagccgagacctc
aagctgatgacagacaccgccgggaacccagaggaggagaggaagagtgagttctaccag
gcaccctggatccaagaggccgtgggtcgctacatattctccaaggtccagcagaggaga
caggagctggagcaggtactcgggatccgcctcacctaa
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