Neoarius graeffei (lesser salmon catfish): 132898066
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Entry
132898066 CDS
T10798
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b
KO
K06236
collagen type I alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04518
Integrin signaling
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132898066 (col1a1b)
04518 Integrin signaling
132898066 (col1a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132898066 (col1a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132898066 (col1a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132898066 (col1a1b)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132898066 (col1a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
132898066
NCBI-ProteinID:
XP_060795426
LinkDB
All DBs
Position
14:complement(23326543..23349442)
Genome browser
AA seq
1442 aa
AA seq
DB search
MFSFVDIRLGLLLAAAVLVARGQGEDDSIFSSCTLDGQLYNDKDVWKPEPCRICVCDSGT
VMCDEVICEDITDCANPEIPEGECCPICIDDTEAPPTDGDTYPSGPKGDPGPPGPPGNDG
IPGEPGLPGPPGPPGPPGLGGYHLPQLSYGSAKSGGPGPPGPPGPMGPRGPPGPAGSTGP
QGFTGPPGEHGEPGSPGPMGPRGPPGPPGKNGDDGDAGKSGRPGERGAAGAQGGRGFPGT
PGLPGIKGHRGFSGLDGAKGDTGPAGPKGESGAPGENGVAGVMGPRGLPGERGRPGSAGP
AGGRGNDGNSGPAGPPGPTGPAGAPGFPGGAGVKGETGPAGGRGPEGPQGARGEPGNSGP
AGPAGVPGPPGNDGSPGAKGSPGPAGITGAPGFPGTRGPAGPAGPAGGVGPKGLNGDAGA
PGPKGEPGPKGEPGPAGPQGLPGPAGDEGKRGARGEPGGPGPVGPPGGRGAPGSRGFPGA
EGAPGPKGAPGELGPNGPTGAQGATGESGRPGEPGLPGSKGVTGAPGAPGPDGKAGPPGP
AGHDGAPGPAGSAGSRGAPGVMGFPGPKGADGETGKPGERGVEGPVGPVGAPGKDGDVGA
PGPSGPAGPAGEKGEQGPAGGPGFQGLPGSQGATGEPGKAGEQGLPGEVGVPGPSGSRGD
RGLPGERGAPGPAGPTGPRGSPGAAGNDGARGDTGAAGAPGGVGPGGPQGMPGERGSSGV
PGPRGERGDPGPKGLNGAPGKDGLRGLPGANGVAGPPGTAGEKGEPGPVGPAGATGPRGG
PGDRGEPGPPGPAGFAGPPGAVGQPGAKGEQGDSGPKGDAGPPGPAGPVGAGGPQGPAGA
TGPKGARGGAGPPGATGFPGAAGRVGPPGPAGVAGPPGPVGPAGKEGQRGARGERGAPGR
TGEVGAAGPPGPTGEKGSPGTDGPAGPIGIPGSRGIGGGNGHPGSPGQRGERGLPGSSGP
TGEPGKQGPSGAVGERGPPGPMGPPGLTGGPGEAGRDGSPGHDGAPGRDGAPGPKGDRGE
AGHAGAPGAPGPPGPPGPIGPSGKTGNRGDAGPAGPAGIPGPGGARGAVGPAGARGDKGE
AGETGDRGMKGHRGFAGMPGLPGPAGSPGEQGPAGPTGPAGPRGPAGSHGVHGKDGMNGI
PGPVGPPGPRGRTGEMGPAGAPGLPGLPGLPGPPGIGEPFPFHQPEKAADPLHGYRADEA
SLRDRDAEVDTTLKSISQKIENIRSPEGTKTNPARMCRDLRMCHPEWKSGTYYVDPNQGS
PLDAIKVFCNMETGETCVNPTRASIPLKNWYISKNIREKKHVWFGESMPDGFQFQYGSEG
SDSEDVSIQMTFMRLMSNKASQNITYHCKNSIAYMDEASGNLKKALLLQGSNDAEIRAEG
NSRSTYTVSEDGCTSHTGTWGKTVIEYQTTKTSRLPIIDIAPMDIGAPNQEFGIEVGSVC
FL
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatatccggttagggctgttgctcgcggccgccgtgctcgtggcg
agaggacagggcgaggatgacagcatattcagtagctgcacattagacggccagttgtac
aatgacaaggacgtatggaaacctgagccatgccggatttgcgtgtgcgacagcggaact
gtcatgtgcgacgaggtgatctgcgaggacataacggactgcgccaacccagaaatcccc
gaaggcgaatgctgccctatttgcatcgacgacacagaagcaccacccactgatggggac
acatatcccagtggacctaagggtgacccgggtccacctggacctcctggtaacgatggc
attcccggagagcctggacttcctggccctcctggccctcctggcccccctggtctcggt
ggataccacttgccccagctgtcttatggtagtgcgaaatccggcggcccaggccctcct
ggaccaccaggcccaatgggaccccgtggacctcctggacctgcaggttctactggtcct
caaggattcactggccctccaggtgaacatggcgagcctggctctcctggtccgatgggt
cctcgtggtccccctggtcctcctggaaagaacggagatgatggtgatgctggcaaatct
ggtcgccccggtgagcgtggagctgctggtgctcagggaggtcgcggtttccctggaacc
cctggacttcccggcatcaagggacacagaggtttctctggtctagatggtgctaaggga
gatactggccctgctggacctaagggagagtctggtgcacctggtgagaatggtgtcgct
ggtgttatgggccctcgtggtctgcctggtgagagaggtcgtcctggatctgctggacct
gctggtggtcgtggtaacgatggcaactctggccctgctggacctcctggacccactggc
cctgctggtgctcctggattccctggtggtgctggagttaagggagagactggccctgct
ggtggccgtggcccagagggacctcagggagcccgtggtgagcctggtaacagtggacct
gctggacctgctggagtcccaggtcctcctggtaatgatggcagccctggtgccaagggc
tctcctggtcctgctggtattactggtgctcctggtttccccggtactcgtggacctgct
ggacctgctggacctgctggaggagttggacctaagggtctcaatggtgacgctggtgcc
ccaggacccaaaggagagcctggtcctaagggagagcctggccctgctggacctcagggt
cttcctggacctgctggtgatgagggaaagagaggagctcgtggtgagcctggcggtcct
ggacctgttggacctcctggaggtcgtggtgcccctggcagccgtggtttccctggtgct
gaaggtgcaccaggccccaagggtgcccctggtgagcttggtcccaacggacctactgga
gctcagggagctactggagaatctggccgacctggagagcctggactgcctggatccaag
ggtgtgactggtgcccctggtgcccctggacctgatggcaaagctggacctcctggtcct
gctggtcatgatggtgctcctggacctgcaggctctgctggatctcgtggtgcccctggt
gtgatgggattccctggacctaagggagctgatggtgagactggtaagcctggtgagaga
ggcgttgaaggacctgttggtcctgtgggtgcccctggtaaagatggtgatgttggtgct
cctggaccttctggacctgctggacctgctggagagaaaggagaacaaggacctgctgga
ggacctggattccagggtcttcctggatctcagggagccactggtgagcctggcaaagct
ggtgagcagggtttgcctggtgaggttggtgttcctggaccttctggttccagaggtgat
agaggtcttcctggtgagcgtggtgccccaggccctgctggccccactggccctcgtggc
tctcccggagctgctggtaatgatggtgctaggggagatactggtgctgctggagctcct
ggtggtgtgggtcctggtggtccacagggaatgcctggagaacgcggctctagtggagtt
cctggaccaagaggagaaagaggtgatcctggacctaagggccttaatggtgctcctggt
aaggatggtctgcgtggtttgcctggtgctaatggtgtcgctggacctcctggtactgct
ggagaaaagggtgaacctggacctgtaggacctgctggagctactggacctcgtggtggc
cctggtgaccgtggtgagcctggacctcctggacccgctggatttgctggacctcctggg
gcagttggccagcctggagccaagggtgagcaaggtgacagtggacctaaaggtgatgct
ggacctcctggacctgctggacctgttggtgctggtggtcctcagggccctgctggtgct
actggacccaaaggtgctcgtggtggtgctggacctccaggtgccactggtttcccaggc
gctgctggtagagttggacctcccggccctgctggtgttgctggacctcctggccctgtt
ggcccagctggtaaagaaggacagcgtggtgcacgtggtgaaaggggagcacctggtcgc
accggtgaggttggtgctgctggacccccaggacctactggagagaaaggttctcctggt
actgatggacctgccggtcccattggaattcctggatctcggggtatcggtggaggtaat
ggacaccctggtagccctggacaaagaggagagagaggtctaccaggttcctctggaccc
actggagagccaggaaaacagggacctagtggtgcagttggtgagcgtggacctcctggc
ccaatgggaccccctggtctgaccggaggtcctggtgaggctggccgtgatggtagccct
ggtcacgatggtgcccctggtcgcgatggtgctcctggccccaagggagaccgtggtgag
gctggacatgctggagctccaggagctcctggaccccctggacctcctggacctattgga
ccatcaggcaagactggaaatcgtggagacgctggtcccgctggtcctgctggcattcca
ggacctggtggtgcacgtggtgccgtgggccctgctggtgctcgtggagacaagggtgag
gctggagagactggagacagaggcatgaagggacaccgtggcttcgctggcatgcctgga
ctgcctggaccagctggctcccctggtgagcaaggacctgctggacccactggccctgct
ggacctcgtggacctgctggctctcatggtgtccatggtaaggatggcatgaatggtatt
cctgggcctgttggacctcctggacctcgtggtcgcactggagagatgggacctgctggt
gccccaggtcttcccgggctcccaggtcttcctggtcctccaggcattggtgagccattc
ccctttcaccagcctgagaaggcagctgacccattgcatggctacagagctgatgaagct
agtctacgtgaccgtgatgctgaggtggacaccaccctcaagtccatcagccaaaagatt
gagaacatccgcagccccgagggaaccaagacaaacccagctcgcatgtgccgtgacctc
aggatgtgccatcccgagtggaagagcggtacctactacgtggatcccaaccagggatct
cctctggatgccatcaaggtcttctgcaacatggagactggtgagacctgtgtcaaccca
actcgtgccagcattcctctgaagaactggtacatcagcaagaacatccgtgagaagaag
catgtctggttcggagagtccatgcctgatggcttccagttccagtatggcagcgagggc
tcagactctgaagacgtgagcatccaaatgaccttcatgcgcctgatgtccaacaaggca
tcccagaacatcacataccactgcaagaacagcattgcctacatggatgaggcctcgggc
aacctgaagaaggctctgctcctgcaaggatccaacgatgctgagatcagggccgagggc
aacagtcgctccacatatacagtcagcgaggacggctgcacgtcgcacactggcacttgg
ggcaagacagtcatcgaatatcagacaacgaaaacatctcgtcttcccatcattgacatt
gctcctatggacattggtgctcccaatcaggaattcggcatagaagttggctcagtctgc
ttcttgtaa
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