Neoarius graeffei (lesser salmon catfish): 132898248
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Entry
132898248 CDS
T10798
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03430
Mismatch repair
ngra03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132898248 (pms2)
03460 Fanconi anemia pathway
132898248 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngra03400
]
132898248 (pms2)
DNA repair and recombination proteins [BR:
ngra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
132898248 (pms2)
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Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
DUF6848
Motif
Other DBs
NCBI-GeneID:
132898248
NCBI-ProteinID:
XP_060795715
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Position
14:complement(43473182..43493955)
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AA seq
856 aa
AA seq
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MTDACSEPARGIRAIDKHSVHQICSGQVVLTLATAVKELVENSIDAGATQVDIRLKENGT
ELVEVSDNGRGVEEENFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHESSQVGTRLVFDHNGHLVQRAPHPRQQGTTVSLQQLFSTLPVRHKEFQRNIKKEFSK
MIHVLQSYCIISTGVRITCTNQLGQGKRNTVVCTSGSHSMRDNIGALFGPKQVQSLLPFQ
QISPNESVKEDYGLTGELPNDLFTISGYVSQADHGVGRSATDRQFFFINKRPCDPSKISK
LVNEVYHMFNRHQYPFVALNISVASECVDVNVTPDKRQIFLQEEKLLLAILKCSLIAMYE
TGVNKISLNHTPQITGSFSRCSDSANSSEDPPKASLTGLTSEDDSETLTRTPKTFFNLAG
LKAAFSKQQVTGTGTKTSNNKTVHNGPTQKKMQSFFHSSEKTNYSRLPDTASEKATSPLK
ALKLGLTKHEHKSDMEADSGLSEQGSFTETPETLCGSSSEIDSPDLALEEPSIKTKPDSE
SVDEVHDVLETSEQETVSVINPEKTLSPKAKKCRRDDNLSEEPQLPSSSASDTSCGLFDK
PVRMQKKTVPLQFSMTELVGRMERQKTQQMKQNDQEPKYRRFRAKINPGESQNAENELKK
EISKDMFKEMEVIGQFNLGFIITKLKSDLFIIDQHATDEKYNFEMLQQDTVLKGQRLIVP
QNLHLPAVSETILIENLEIFKKNGFDFLIDENAPVMERVKLISVPTSKNWTFGPSDIEEL
IFMLSDSSGVMCRPSRVRQMFASRACRKSVMIGTALNTSEMKKLVAHMGEIEQPWNCPHG
RPTMRHLVNLDVISQD
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgacagacgcttgctcggagccagccagaggcatcagggccattgataaacactcggtg
catcagatctgttctgggcaggtggtgctgactctggccacagctgtaaaagagctggta
gagaacagcatcgatgcaggtgctacacaagttgacatcaggctcaaagagaatgggacg
gagctggtagaagtctctgacaatggacgaggcgtcgaggaggagaactttgaaggccta
accttaaagcaccatacatcgaaactgagagatttctccgacttaattcatgttgaaact
tttggcttccgtggtgaagccctgagctcactgtgtgccctcagtgacctcagcgtggtg
acctgtcatgaaagtagccaagtgggcactcggctcgtctttgaccacaatggccatctt
gtccagcgagctccccatccccggcagcaggggaccaccgtcagccttcagcagctcttc
tccaccttgccagttcgccacaaagagtttcagcgcaacatcaaaaaggagttttctaag
atgatccacgtcctgcagtcatactgcatcatctccactggtgtgcgcatcacatgcact
aatcagcttggccaaggcaagcgtaacacagtagtgtgcaccagcgggagccacagcatg
agagacaacattggagcgctgttcgggccgaaacaggtccagagtttacttccttttcag
caaatatctcccaatgagagcgttaaagaggattacggcttaactggggaacttcctaac
gaccttttcacgatctctggctatgtctcacaagccgaccacggtgtgggacgaagtgca
actgaccggcagttcttttttattaataaaaggccctgtgatccatccaagatttccaaa
cttgtaaatgaagtctaccacatgttcaaccgtcatcagtacccgtttgttgctctaaac
atttccgttgcttcagaatgtgtcgacgtaaacgttacacccgataagcgtcagatattt
ctgcaggaagagaagctgttgcttgctatcctgaagtgctctctcattgctatgtatgag
actggagtcaataaaatcagtctcaatcacacaccacaaatcacaggcagtttttccaga
tgtagtgactctgctaacagttcagaagatcctccgaaagcttcgctgactggattgact
tcagaagatgattcagagactttgacacggaccccaaagacgttttttaacttagctgga
ctaaaggcggcattttcaaaacagcaggttactggtactgggacaaagacctccaacaat
aaaactgtgcataatggtccaactcaaaaaaagatgcagtcttttttccatagctccgaa
aagactaactatagtagattaccagatactgcttctgaaaaagcaacatcaccactgaaa
gctttgaaattgggcctaaccaagcatgagcacaaatcagacatggaggctgattcaggt
ctgtcagagcaaggctccttcacagaaaccccagagactctgtgtggaagcagttctgaa
atcgactctccagacttggctttagaggaacctagcattaaaacgaagcctgacagtgag
tctgtagatgaggtgcatgatgttttagaaacttctgagcaagagacagtgtctgttatt
aatcctgaaaagactttgagtcccaaggcaaaaaaatgtaggcgggatgataacctatca
gaagagccccaactgccatcctcgagtgcgagcgatacttcctgtggactgtttgacaaa
cctgtcagaatgcagaagaaaaccgtgcctttgcagttttcaatgaccgagttggttgga
aggatggagagacaaaagacccagcaaatgaagcagaatgatcaggagccaaaatataga
cgcttcagggcaaaaattaaccctggagaaagccagaatgcagagaatgagttgaagaaa
gagatcagcaaggacatgtttaaggagatggaggtaattggtcagttcaacctgggtttt
atcattaccaagttaaaatccgatctttttattatcgaccagcacgcgacagacgaaaag
tacaactttgagatgctacaacaggacactgtgctaaaaggacagagacttatagttcca
cagaatctccacctgcctgctgtaagtgaaactatactgattgaaaatctcgaaatcttc
aagaaaaatggcttcgacttcctcattgatgagaatgcaccagtcatggagagagtgaag
ctaatatctgtacccacaagtaagaactggacctttggcccaagtgacatcgaggagctt
atcttcatgcttagtgacagttctggagtcatgtgcaggccctctcgagtcaggcagatg
tttgcatcgagagcatgccgtaaatcagtaatgatcgggactgcactgaacaccagtgag
atgaagaagcttgtggcccacatgggggaaattgagcagccttggaactgtcctcacggc
aggccgaccatgaggcacctggtgaaccttgatgtcatttctcaggactga
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