Neoarius graeffei (lesser salmon catfish): 132898343
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Entry
132898343 CDS
T10798
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132898343 (dhx8)
Spliceosome [BR:
ngra03041
]
Complex C
Other components
Step II factors
132898343 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
TsaE
PhoH
Sigma54_activ_2
Presenilin
Cas3-like_C_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
132898343
NCBI-ProteinID:
XP_060795862
LinkDB
All DBs
Position
14:complement(47982456..48017427)
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AA seq
1195 aa
AA seq
DB search
MADLGEDELKKLEYLSLVSKVCTELDNHLGISDKDLAEFVISLAEKNPTFESFKSVLIKN
GAEFTDSLISNLLRLIQTMRPPTKASTSKGGEPVVKPKNEKDRLKEMFPALCRADNPKAR
TMLDEDDVKVAADAMKELEMFMPSAKATDSKSSKQRSEAGSSKKSRRSRSRSRDRDRKRR
HYSRSRSRSRSPNRERRKRRSRWHSRSRSRSPGRGDREKGSDRWRDKHVDRPPPEEPAVG
DIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLS
FTGSKTSLSMKDVDQETGEDLNPNRRRNVGGEGQEESAMRNPDRPTNLNLGHAPEVEDDT
LERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEE
PPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQREAEMDSIPMGL
NKHWVDPLPDAEGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQLSIIEQRESL
PIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTARGKIGCTQPRRVAAMS
VAKRVSEEYGCCLGQEVGYTIRFEDCTSPDTVIKYMTDGMLLRECLIDPDLGQYAIIMLD
EAHERTIHTDVLFGLLKKTVQKRPDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVE
VLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVP
ELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVY
NSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNL
ASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL
EPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQPEGDHLTL
LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKATVRVQK
AICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREV
TTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggctgacctcggtgaagatgagctcaaaaagctcgaatatttgtctttagtgtctaaa
gtttgtactgagcttgataaccacttggggatcagcgataaagacctcgccgagtttgtc
atcagccttgcagaaaaaaacccaacatttgagagtttcaagtccgtgctgatcaaaaat
ggagcagagtttacagattcactcatcagtaatttactccgtctcattcaaacaatgcga
cctcccactaaagcatccaccagtaaagggggtgagcctgttgttaagccaaagaatgaa
aaagaccggttaaaggagatgtttccggccttgtgcagagctgataatcccaaagccaga
accatgctagacgaagacgatgtaaaggttgcagctgatgctatgaaagagctggagatg
ttcatgcccagtgccaaggccacagactctaagagcagcaaacagagatctgaagccggc
agcagcaagaagagtagaaggagcaggagccgaagtcgagacagggacaggaagagacgc
cactactctcgttcccgctccagatctcgctctcccaacagggagaggaggaagcgcagg
agtcgctggcattcccgcagcagatccaggagtccaggccgcggtgaccgagagaaaggc
tcagaccgctggagggacaagcatgtggaccggccacccccagaggagcctgctgtgggt
gacatctacaacggcaaagtcaccagcatcatgcagtttggttgctttgtgcagcttgaa
ggattgaggaaacgttgggagggcttggttcatatctctgagcttagaagagagggcaga
gtggcaaatgtggcagatgtggtcagtaaaggtcagagggtgaaggtcaaggtattgtcc
ttcacaggctctaagaccagcctgagcatgaaggatgttgaccaggaaacgggtgaggac
ttaaatcctaacagaaggaggaatgttggtggtgagggtcaggaggagtcagccatgagg
aatccagacagacctaccaacctcaacctgggtcatgctcctgaggtggaggatgacaca
ctcgaacgcaagagactgaccaagatctctgatcctgagaagtgggagatcaaacaaatg
attgctgccaatgtgctgtccaaagaggaatttccagactttgatgaggagacagggatc
ctacctaaagtggacgatgaagaggatgaggacctggagattgaactggtggaagaggag
ccgcctttcctgagaggacacaccaaacagagcatggatatgagccctgtgaaaatagtg
aagaaccctgatggctcgctgtctcaagcagccatgatgcagagcgctcttgctaaagaa
aggcgggaagtgaagcaggctcagcgtgaggctgagatggactccattcctatgggtctc
aacaagcactgggtggaccctctacctgacgctgaaggcaggcagattgcagctaacatg
cggggcattggcatgatgcccaacgacatcccagagtggaagaagcatgcttttggtggc
aacaaggcctcatacggaaagaagacacagctgtccatcatcgaacaacgagagagtctg
cccatctacaagctcaaagagcagctcattcaggctgttcatgataaccagatcctgatt
gtgattggagagacaggctcagggaagaccacacagatcactcagtacctggctgaagct
ggatatacagctcgtgggaagattggctgcacacagccgagaagagtggctgccatgtct
gtggctaagagagtgtcagaagaatatggttgttgtttgggacaggaggtcggctacact
atccgttttgaggactgcacgagtccagacacagtcatcaagtacatgacagatggtatg
ctgctcagagagtgtctgattgaccctgatctgggccagtatgctatcatcatgctggac
gaggctcatgagaggaccatccacaccgacgtgctctttggcctgctcaagaagactgta
cagaaacgcccagacatgaagctgattgtgacatctgctacactggatgctgtgaagttc
tcccagtatttctacgaggcccccattttcaccattccaggtcgtacttatccagtagag
gtgctgtacactaaagagccggagaccgattacctggatgccagtctgatcacagtcatg
cagatccacctcactgagccaccgggtgatattctggtgttcttgacgggtcaagaggag
atcgacacagcctgtgagatcctgtatgagcgaatgaaatcactcggccctgacgtgcca
gagctgatcatcctacctgtgtactctgcgctgcccagtgagatgcagaccaggatcttt
gacccagctccacctggcagcagaaaggtggtcattgcgacaaacattgctgagacttct
ctgaccattgatggaatctactatgtagtggatccaggttttgtcaagcagaaggtgtac
aactcaaaaaccggcattgaccagcttgtagtgacccccatttctcaggcccaggctaaa
cagcgagcaggccgagcagggaggacaggacctggcaagtgctacagactgtacacagaa
cgggcatatagagatgagatgctcaccaccaatgtgcctgagatccagagaactaacctg
gccagcactgtgctctcccttaaggctatgggcattaatgacctgttatcatttgacttc
atggacgctcctcctatggagacactgatcacagcaatggaacagctgtacacattagga
gctctggacgatgagggattactcactcgtcttgggcgcaggatggctgagtttcctcta
gagcccatgctgtgtaagatgctcatcatgtctgtccatctgggctgcagtgaagagatg
ctaaccatagtgtccatgctctctgtgcagaacgtcttctacaggccaaaggacaaacag
gctctagctgaccagaagaaggccaagttccaccagcctgaaggagaccacctcacttta
ctggctgtctacaactcttggaagaacaacaagttctccaatccctggtgctacgagaac
ttcatccaggctcgctcattacgccgtgcacaggatatccgcaaacagatgttgggcatc
atggaccgacacaagttggacgtggtgtcatgtggtaaggcaacagtacgtgtgcagaag
gcaatttgcagcggtttcttccggaacgctgctaaaaaagaccctcaggaaggttacagg
acactcatagaccagcaggtggtttacattcacccctcaagcgccctcttcaaccgacaa
cctgagtgggtggtataccatgaactggtgttgaccaccaaagagtatatgcgagaggtg
acgacaatcgacccacgctggctggtggagttcgcgccagccttcttcaaagtatccgac
ccgactcgcctcagcaaacagaagaaacagcagcgtctcgagcctctctacaaccgatac
gaggagcccaatgcctggagaatttccagagctttccgcaggcgctag
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integrated database retrieval system
