Neoarius graeffei (lesser salmon catfish): 132898528
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Entry
132898528 CDS
T10798
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
132898528 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngra03400
]
132898528 (msh2)
DNA repair and recombination proteins [BR:
ngra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
132898528 (msh2)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
132898528
NCBI-ProteinID:
XP_060796189
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Position
14:complement(62908885..62964015)
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AA seq
937 aa
AA seq
DB search
MAVQPKQSLSIDSASEAGFLNFYFSMPEKPDTTVRIFDRSDYYTVHGKDAGFAAKEVFKT
NGVIKMLGAGSRRLESVVLSKMNFEAFVRDLLLVKQYRVEVYRNKTGGKSSKDHDWQIAY
KASPGNLTQFEEVLFGSGGGLGEGAAGVVGIRVGTGNDGQRVVGVGYVDSILRTLCVCEF
PDNDQFSNLEALLVQIGPKECVLPSGDTAGDLGKLRQVVLRGGILISDRKKAEFTTKDIV
QDLNRLLKSRKGETVSSAALPEMEKQIAMSCLAAVIKYLELLSDETNFSSFKMTAFDLSQ
YMRLDNAAVKALNLFQTASDDPVGTHSLAGLLNKCRTPQGQRLVSQWLKQPLMDKNKIEE
RLDLVESFVEDSELRQTCQEDLLRRFPDLNRLAKKFQRQNANLQDCYRVYQAVGQLPVLV
LALERHAGKHQVLLNGAFVTPLNDLVSDFSKFQEMIETTLDMNQIEHHEFLVKPSFDPTL
SELRESMDQLEKSMKATLNSAACELGLDAGKTIKLESSGQMGYYFRVTCKEEKALRNNKK
FTTLDVQKNGVRFTNSKLRSFNEEYTKNREEYEEAQNAIVKEIVSIAAGYVDPLQILNDV
IAQLDAVVSFAAVSHAAPVPYVRPTILEKGTGRLVLKGARHPCVEAQDDVAFIPNDVTFT
KGKEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAEVSVVDSVLARVGAGDNQ
IKGVSTFMSEMLETATILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFC
LFATHFHELTALAQQVSIVNNLHVTALTTDSTLTMLYRVKPGVCDQSFGIHVAELANFPK
HVIADAREKALELEEFQDLSRVDEDGPEAKKHCLEKKDGEKIIEDFLKKVKVLPFQDMTD
EAIKAELRKLKAEVVAHNNAFVNEIVSRAENAKTTLA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgcaaccaaaacagagcttgtccatagacagcgcgtctgaggctgggttttta
aacttttatttctccatgcctgagaaacctgacacgacggtgaggatatttgatcgcagt
gattactacaccgtgcacggaaaagacgctggctttgctgctaaagaagtctttaagacg
aatggagttattaaaatgctcggtgcaggcagcaggaggctggagagtgtggtgctcagt
aagatgaactttgaggcgtttgtgagagacctgctgctggtcaagcagtaccgtgtggaa
gtgtacaggaataagacgggaggcaagagcagcaaagatcacgactggcaaatagcctac
aaggcctctccaggaaacctgacccagtttgaagaggttctgtttggtagcggaggaggt
ttaggggaaggggctgctggagtggtggggatccgtgttggaacaggaaatgatggacag
cgtgtcgtgggtgtcggatatgttgatagcatactccgaacgctctgtgtctgcgagttt
ccagataacgaccagttctccaatctggaagctctcctggtgcagattggccccaaagag
tgtgtgcttcctagtggagatacagcaggagatctgggtaaactaagacaggtggtgctg
cgtggaggcattctcatctcggacaggaagaaggcagagtttacgaccaaggacatagtt
caggatctgaaccgtttactgaagtctcgcaagggagagacggtgtctagtgctgcactc
ccagagatggagaaacagattgctatgtcctgtttggctgctgtcataaagtatctggag
cttctttctgatgagaccaacttcagttccttcaaaatgactgcatttgacctcagccag
tacatgcgactcgacaacgctgccgtgaaggcgcttaatctcttccagactgcctctgat
gatccagtgggtacacactccctggcaggacttttgaacaagtgtcgaacacctcaaggc
caacgactggtcagccagtggcttaaacagccgctaatggacaaaaacaagatcgaggaa
aggctagaccttgtggagagttttgtggaggactcggagctgagacagacctgccaggag
gacttgctgcgtcggttccctgacctgaatcgcctggctaaaaaattccagcggcagaac
gccaacctgcaggactgttatcgtgtgtaccaggctgtgggtcagctgccagtgctggtg
ctggccttagagagacatgctggcaaacatcaagtcctgctgaatggagcattcgttaca
cccctcaatgacctcgtctccgatttctccaagtttcaggagatgattgaaactacactg
gacatgaaccagattgagcaccatgaatttctggtaaaaccctcctttgaccctacactg
agtgaactgagggagagcatggaccagctggagaaaagcatgaaagcaactctaaacagt
gcagcctgcgagcttggtttggatgcaggcaaaacgataaagctggaatccagtggacag
atgggatactatttccgtgtcacctgcaaagaagagaaagccctgcgcaacaataagaaa
ttcacaaccttggatgtgcagaagaacggcgtgcgcttcaccaacagtaagctgaggtct
ttcaatgaggagtacaccaagaacagggaagagtatgaggaggctcagaacgccattgtc
aaagagatcgtcagcatcgctgctggttatgttgacccactgcagatactgaatgatgtg
atagcacagctagatgcagtggtgagcttcgcagccgtatcccatgcggcccctgtgccc
tacgtgaggccgaccatcttggagaagggtaccggcaggttagtcctgaagggagcacgg
catccttgtgtggaagcccaggacgatgtggctttcatccccaatgacgtgaccttcact
aaaggaaaggagatgttccacatcattacaggtccaaatatgggtgggaaatccacctac
atccgtcaggtgggcgtgatcgttctgatggcgcagattggctgctttgtgccatgtgat
gaagcggaggtgagtgtggtggacagcgtgctggcccgtgttggtgcaggggacaaccag
attaaaggagtgtccacatttatgtctgagatgctcgagacagccaccatcttacgttct
gccactgaggactctctgatcatcatcgatgaactgggaagagggacttccacctatgat
ggatttggcttggcctgggccatctcggagtacattgccacacgcctgaagtccttctgc
ttgtttgctactcacttccatgagctgaccgctttagcacagcaagtgtcgatcgtgaac
aacttgcatgtcactgcgctgaccacagacagcactctcaccatgctctacagggtcaaa
ccaggtgtgtgtgaccagagctttgggattcacgtagctgagctggcaaacttccccaaa
catgtcattgctgatgctcgggaaaaggctttggagcttgaggagtttcaggatctctcc
agagttgacgaggatggacctgaagcgaaaaagcattgcttggagaaaaaggatggtgag
aagattattgaggatttcctgaaaaaggtgaaggttctacctttccaggacatgactgat
gaggctatcaaagcagagctgcgcaaactaaaggccgaggtggtcgcccacaacaacgct
tttgttaacgagatcgtatcacgtgctgagaatgcaaaaactacattggcataa
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