Neoarius graeffei (lesser salmon catfish): 132898978
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Entry
132898978 CDS
T10798
Symbol
pkd1l2a
Name
(RefSeq) polycystin-1-like protein 2
KO
K04988
polycystin 1L2
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ngra04040
]
132898978 (pkd1l2a)
04091 Lectins [BR:
ngra04091
]
132898978 (pkd1l2a)
Ion channels [BR:
ngra04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
132898978 (pkd1l2a)
Lectins [BR:
ngra04091
]
C-Type lectins
Others
132898978 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
SUEL_Lectin
Lectin_C
Ion_trans
GPS
PKD
PKD_4
Chordopox_A33R
Motif
Other DBs
NCBI-GeneID:
132898978
NCBI-ProteinID:
XP_060796623
LinkDB
All DBs
Position
15:complement(18710481..18760139)
Genome browser
AA seq
2482 aa
AA seq
DB search
MDTHLLSTLLLLVILTVSAVDSEEDTETLFCLEHQKAFEGSCYEFVTLQRSFVEAQTWCE
RGGGHLAFIRNDEMQQFLQRYLQSEQDWWLGLAPASFNLSMGSTATEGSLSWLDGSDVSY
PNWLREPEFGEACGYILKNSGFQWASTKNCSQEFHFICEFESGHALACLGHNATLQCGSG
QVIEIDDSFYGRKTLHYCRARHTVPHTSIQEECSWVDMVDTVSEHCHGLQVCQAVAKGAL
FGEPCPGLGSYLSVDYHCKDGLHLLINKQAAVFDNVTLSIKWLLHPFQGNLTCTLNAGDG
HTIDPYMPEELQSNVVHRYQDAGVYTVTVECSTSEWHVTAQKTITVQEPVGEFCKIVCHS
SNQTTDNETCKGLKHHVLRIQVQLSAGTNVTYKIQHGVTELANSSEVRGIVPHNITIPQK
ALQLLGLGCHQLTLLASNGVTAPDVSTTLELCVMEPVDGLQVSVASKQDLCSDSALYFNV
SLEHGAPVDVLFLVSGDNDSFSETHHMFNGSLQMFRVSSKIEGAVNIAVRAWNLFSSVEV
DAGDTLLDCQVDNLTRDHMGEQSGNNLMITANPESPVIGASSVMLDITGLNGNAKLYTFA
WNCSGSCPCNVSTQTQTHQINATCLPPPYSFSVYSVTATKATGQPEEQTARKCISVSSGN
DFNPVITCSNCNPVNVDAKVKLQLQCEGCQQIVWYFEDTNPVPDVLSFCYSEKGQKVLVK
QKEGGSSFIIESATLVNAQQNINVVAYGIRDGLSGSTQFTIPIFGASSTLFPTLLPDKST
MTTSSIPFSSPTIMITNTLRDVFHPPSCNINPTVGDILSPFNITCTVAPSFCKAGPCMYC
FRTSNDDYLYCGHNQTAESLFLPVGSDANYSLVVAIIVENVAGQKINTTLSVQVNDASIG
PTVGDLQSFVSKQVDQLLQLGKLTGATLAQMFQSVSNRLNKDTAEGQEQDAKMKLREQML
LDLGTAVNAAPLRNPSEVQKTADAVVGLTTQSEELTSTAQLEASSLLSNLSMSLVSLTLS
EGDDKEITRQAVTPIIQAASNILKVSASPNQQEIISENLLNAADNIQSALLAGASIDQEP
IIISTSEISVYVNRMSPLALQKQSFSIEDDSSASFVLPSLGPNVLHFEEPVDVRMLNFAL
NPFPWREGEPINGVVASLSITRENGSVIPVSNLSEEIEIILPRPEVEVNSTFLDLGNYST
LVINVTTPNISLVLKLDPSEEIPLHLLLGFEHYPNNTHYKTTIQLPQAGNSTEERYAWVL
DHRNIPLEVGMYYLLVRPIGQAGVNSSNATVYVTSIAAQCKYWDETETNWSDYGCRVGPR
TTAVLTQCLCTHLTFFGSSFFVMPNLVDVSRTAELFATFVNNPVVVCFVGAIFLVYLIVV
VWARRKDIQDTAKVKVTVLEDNDPLAEYRYLLTISTGHRRGASTSSQVTVTLTGSEGESE
PHHLIDPDKPVFERGGMDMFLLTTPFSLGELQSIRLWHDNSGKHPAWYVNKAMVQDLETG
QKWHFLCSSWLAIDVGECTLDKVFPAATELDLKRFSNLFFMKTTKDFQDGHIWFSVINRP
PNSNFTRVQRVSCCFSLLLCTMLTSIMFWGIPTDPSEQTMDLGKIEFTWQQVMIGIQSSI
IMFPINLLIVSIFRNVRQRERRTDQTPKQYKTDSVKQAKTGQVSPTQLPSPQSDHREITP
DAVIKDIRRIAQSLSKALRSPMPRIDPEKMDINALLSLVEDIICQQNRAGGEFYSDASKK
ELAVSLGAVNLHERSPEQMPKEKHSIYRQYLYKQLQNVEKELRLLGPSQFSKPESYIQAV
LQVQGMKRLLEPYLSSSSNRDQVSCSSSLGEDHGGDKKCCQKGLPWWFVFVGWILVVATS
GVSAYFTMMYGLTYGTDRSISWLISMVVSFFESIFITQPMKVLGFAVFFALVLKKVDQEE
YGDVPIEGALSSTDNPDGICIARRDSTCSFYQPPPPSDIEKMRNNMIKEQKVFALIREIL
IYVGFLWMLLLVAYGQRDPNAYYLTQHIQQSFRNGIADSMNYKDVFTWANTTLLNNIFGR
QPGFITDGNSKLVGDARLRQVRVHKDSCRTSSFMSHFIHDCHAPYSWDVEDMGSYGPSWN
RSTDVNVSKSQLMPWRYQTQSRLRAHPIWGGVAFYRGGGFVVDLGSNKQNASSLLQYLLD
NIWVDKYTRAIFVEFTVYNANVNLFCIVTLMFETTAVGAFQYRSDLQSVRLYQSTGGFHI
FMMASEATYFLFILYYMFQQGKLLKQHKWEYFRSKWNLLELAIIILSWSALCVFIKRKLL
GIRDIEYYQNHKDQHASFHETAAADGVLGYLVAFLVLLATVKLWHLLRLNPKLQMITATL
RRAWNDISGFIIVMTIMFLAYSIACNLMYGWKLYSYHTLLHAAKTIVSLQLGIFNYEEVL
HYNPVLGAFIIGSCIIFMTFVVLNLFISVILVAFSEEQIHHKPSEEEEIVDLMLMKICSL
LGIKVKKNQLPEEPRATPFAIS
NT seq
7449 nt
NT seq
+upstream
nt +downstream
nt
atggatacgcatcttctctccactctcctacttttggtcattctcacagtcagtgcagtt
gatagtgaagaagacacagaaaccctgttctgtcttgagcaccaaaaagcttttgaaggc
tcctgctatgagtttgtgaccctgcagcgcagcttcgtcgaagctcaaacttggtgtgag
cgtggtggtggacatttggccttcatccggaatgatgagatgcaacagtttctccagaga
tatttgcaatcagagcaggactggtggctaggactcgcacctgcctccttcaacctcagc
atgggctccactgccacagaaggttccttgtcctggctggatggatctgatgtgagttac
cctaactggctccgtgaacctgaatttggagaagcatgtggttacattttgaagaactct
ggatttcaatgggcatcaaccaaaaactgtagccaagagttccactttatctgcgagttt
gagtcaggacatgctctagcctgtttgggacataacgccacgctacagtgtgggtctggt
caggttatagagattgatgacagcttctatggcaggaagactctgcactactgcagggcc
agacacactgtgcctcatacatccatacaggaggagtgcagctgggtcgacatggtggat
acggtgtcggagcactgccatgggttgcaggtatgccaggctgtagccaagggagcattg
tttggagaaccttgcccaggactaggaagttatttatcagtggattatcactgcaaagat
ggtcttcacctgctgattaacaagcaagctgctgtctttgataatgtcaccttatccata
aagtggttgctccacccttttcaaggaaatctcacatgcaccttgaatgccggtgatgga
cacaccattgacccctacatgcctgaagagttacagagtaatgtagtgcacaggtaccaa
gatgctggagtctacactgttacagtggagtgtagcaccagcgagtggcacgtgacagct
cagaaaaccattaccgtccaagaacctgttggggaattttgcaaaattgtgtgtcacagc
tcaaaccagacaacagacaatgagacctgtaaaggtcttaaacaccatgtactgagaatc
caagtgcagctcagtgctggtacgaacgtcacatacaaaatccaacatggggtcactgag
cttgccaactcttctgaagtcagagggatcgttcctcacaacatcactatccctcaaaaa
gctttacagcttttgggcttgggatgccatcaacttactctcctggcctccaatggagtg
acagctccagatgtttctactactctggaactttgcgtgatggagccagtagacggtctt
caggtctctgtggcatcaaaacaagacctgtgctcagactcagctctatattttaatgtc
tctctggaacatggtgctccagtggacgtgctctttctggtgtctggggataatgacagc
ttctctgaaacccatcacatgttcaatgggagtttacagatgttcagggtttccagcaaa
atagaaggtgctgttaatattgctgtcagggcatggaacttgttttcgtcagtggaagtg
gatgccggagacacacttttggattgccaggtggacaacttgacaagagatcatatggga
gagcaaagtggcaataacctgatgatcacagccaacccagagagcccagtcataggcgcg
agtagcgtaatgttggacattactggcctaaatggaaatgctaaactttacacatttgcc
tggaactgcagtggatcttgtccttgtaatgtcagtactcagactcaaacccaccagata
aatgctacttgtctccctccaccgtacagcttttcagtctactctgtgactgctacaaaa
gcaacagggcagccagaggaacagacagcaagaaaatgcatctctgtgtcctcagggaat
gatttcaatccagtcattacatgttccaactgcaacccagtgaatgtcgatgcaaaggtt
aagttgcagttgcagtgtgaaggctgtcagcaaattgtttggtactttgaggacacaaac
cctgtacctgatgttttgagtttctgctattctgaaaaaggacagaaggtactggtgaaa
cagaaggaaggtggcagctctttcataattgaaagtgcaactctagtcaatgcacagcag
aacataaatgttgtcgcttatggtataagagatggcttatctggatcaactcaattcacc
atcccaatatttggtgcctcatctactttgttcccaacattactacctgataagtctact
atgaccacttccagtattccctttagttctcccaccattatgattactaataccctgcga
gacgttttccatccgccatcctgtaacattaaccccactgttggagacattttgtctccc
ttcaacatcacgtgcactgtggctccttcattctgcaaagctggaccctgcatgtactgc
ttcagaacatccaatgatgactacttgtattgtggccataaccagacagcggagtcactc
tttctccctgtggggagtgacgctaactacagcctggttgttgcgatcattgttgagaat
gtggcaggacagaagattaacacaaccttatcagtccaggtaaatgatgctagtattggg
ccgacagtgggggatctgcagagctttgtgtccaaacaggtggatcagctgttgcagctt
gggaagctgacaggggcaacactagcccagatgttccagtctgtatctaacaggctgaac
aaggacacagccgagggccaagaacaagatgcaaagatgaagctacgagagcagatgctg
ttagacctgggtacagctgtgaatgctgcccccctcaggaacccttcagaagtgcaaaag
acagctgacgctgtagtgggcctcactacacagagtgaagagctgacatctacagctcag
ctagaggcaagctcattattgtcaaacctcagtatgtccctggtctctcttaccctctct
gagggggatgacaaagaaataacaaggcaggcggtcacacccatcattcaggccgccagt
aacattctcaaagtttctgccagtccaaaccagcaggaaatcatttcagaaaacttgcta
aatgcagcggacaacatacaaagtgcactgctggctggggcaagcatagaccaagaaccc
atcatcattagcacctctgagatcagtgtgtacgtaaacagaatgtcaccactggcactt
cagaaacagtccttcagtattgaagacgacagctcggccagttttgtgctcccatctttg
ggtcctaatgtgctgcattttgaagagccggtggatgtgcggatgcttaattttgcatta
aaccctttcccatggagggaaggtgagcccataaatggagtggttgcatctttatccatc
acccgagagaatggttctgttatcccagtatcaaaccttagtgaggagattgaaattatc
ttaccaagaccagaggttgaagttaacagtacatttctggatctggggaactacagtacc
ttagtcattaatgtgacgactccaaacatatctctagttttgaaattggacccctctgaa
gagatacctttacatttactcctgggttttgaacactacccaaacaacactcactacaag
accacaattcagcttcctcaagcaggaaattcaacagaagaaaggtatgcatgggtgctg
gaccacaggaatataccacttgaagtcgggatgtactatcttctggtgaggcctattggc
caagcaggtgtaaactcctcgaatgccacagtgtacgtcacatcgatagctgctcagtgt
aagtactgggatgagactgaaaccaactggagtgactatggctgcagggttggacctcgt
accacagcagtgcttactcaatgcctttgtacccatttgacattttttgggagttccttc
tttgttatgcccaatctggttgacgtgtcccgcactgcggaactttttgccacgttcgtc
aataaccctgtggtggtgtgttttgtgggtgccattttccttgtctatctcatagttgtg
gtttgggcacgaagaaaggacatccaagatacagcaaaggtgaaagtcacagtgctagag
gacaatgatcccttagctgaatatcgctacttattgaccatcagcactgggcatcgccga
ggagcttctacatcctctcaggttacagtgactctaacgggctctgagggagagagtgag
ccccatcatttaattgatccagacaagccggtatttgagagaggaggaatggacatgttc
ctcctcaccacgcctttctcacttggagagctgcagagcatcagattatggcatgataat
tctgggaaacatcctgcctggtatgttaataaggcgatggtccaagacctggagacaggg
caaaagtggcatttcttatgtagttcatggctggccattgatgtaggagagtgcaccctg
gacaaagtgtttcctgcagcaacagagctggacttaaaaaggtttagcaatctgttcttt
atgaaaaccaccaaggatttccaagatggtcacatttggttttcggtgatcaatcggcca
ccgaatagtaacttcactcgagtgcagcgtgtttcatgctgtttttctctgttgctctgc
accatgctgaccagcatcatgttctgggggattcccactgacccctctgagcagaccatg
gatctgggtaagattgagtttacctggcagcaagtgatgattggaatccagagctctatt
attatgttccccatcaaccttcttattgtgagcatcttcagaaatgtccgacaaagggaa
cgaagaacagatcaaactcctaaacagtataagactgattctgttaagcaagcaaaaaca
ggacaggtgtcgccaacccaacttccttctccacagagtgaccatagggagatcacacca
gatgctgtaataaaggacatcagaaggatagcccaatcactctccaaggctctgaggagc
cccatgccaaggatagaccctgagaaaatggatatcaatgctctcctatcactagtcgaa
gatattatttgtcagcagaaccgtgcaggaggcgagttttactctgatgcctccaaaaag
gagcttgctgtatctctcggggctgtaaatctgcatgagaggagtcctgaacagatgcca
aaagagaaacatagtatctacaggcagtatctctacaaacaactccagaatgtggagaaa
gagttgaggctgctgggtccttcccaattctctaaaccagagagctacattcaggcagtg
ctgcaggttcagggcatgaaaagattgctagaaccatatctctcctccagctccaataga
gaccaggtatcctgcagctccagtctgggggaggaccatggaggtgataagaagtgctgt
cagaaaggcttgccctggtggtttgtgtttgttggctggattcttgttgtagccactagt
ggagtgtcagcatatttcaccatgatgtatggactgacttacggaacagaccgctctatt
agctggctcatttctatggttgtgtcttttttcgagagcatcttcattacccagcctatg
aaggtgcttggatttgctgtcttctttgctctggttctaaagaaagttgatcaagaagaa
tatggagatgttccaattgagggtgctctatcaagtacagataaccctgatggcatatgc
attgccaggagggacagcacatgcagtttctatcagcctcctcctccctctgatattgag
aagatgaggaacaacatgatcaaagaacagaaagtctttgcactcatcagggagattctc
atttatgtggggttcctctggatgctgctcctggtggcttatggtcagcgagatcccaat
gcttactacctcactcagcacattcaacagagtttcaggaacggcattgctgacagtatg
aactacaaagatgtgtttacctgggcaaacaccaccctcctaaataatatttttggacga
caaccaggcttcatcacagatggaaattcgaagcttgtaggcgatgcccgactccgacag
gttcgagtgcacaaggattcctgcaggacctccagcttcatgagtcatttcattcatgac
tgccatgctccatactcttgggatgtggaggacatggggtcctatggtccaagctggaac
cgatcaacagatgtaaatgtgtctaagagtcagctcatgccatggcggtaccaaacccag
tccagactcagggcgcaccctatctggggtggggtggctttctacagaggtgggggcttt
gttgtggacctggggtcgaacaaacaaaatgcaagcagtttgcttcagtaccttttagac
aacatctgggtggacaaatacactcgtgctatctttgtggaattcacagtgtataatgct
aatgtcaacctcttctgtatcgtcacgctgatgttcgagaccacagcagtgggagcattt
cagtatcgcagtgatctccaaagtgtccgcctttatcagtcaactggtggttttcatatt
ttcatgatggcctccgaggccacctattttctcttcattctttattacatgtttcagcag
ggcaagcttctgaaacagcacaagtgggaatacttcaggagcaagtggaatcttttggag
ctagccatcattattttaagctggagtgcactgtgtgtttttatcaaaaggaaactgttg
ggcatccgggacattgagtactatcaaaaccacaaagaccaacatgctagcttccacgag
actgccgcagcagatggagttcttggataccttgtagctttcctggttctgctggctacg
gtcaaactgtggcacctgctgcgcctcaacccgaaactgcaaatgatcacagcgacattg
cgtcgggcgtggaacgacatctctggcttcatcatcgtcatgacaattatgttcttggct
tactccattgcttgtaatttaatgtatggttggaagctttattcataccacactcttcta
catgctgccaagaccatcgtaagcttacaactggggatcttcaactatgaggaagtttta
cattacaatcctgttcttggtgcattcatcatcggttcttgcatcatcttcatgacgttt
gtggttctgaacttatttatatccgttatcctggtggcattttctgaagaacagatccac
cataagccatctgaagaagaggaaattgtggatctgatgctgatgaagatatgcagcctt
ttgggaatcaaggttaagaagaaccagttgcctgaggaaccaagagcaacaccttttgcc
atctcataa
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integrated database retrieval system
