Neoarius graeffei (lesser salmon catfish): 132899399
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Entry
132899399 CDS
T10798
Symbol
rc3h1a
Name
(RefSeq) roquin-1a isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ngra03000
]
132899399 (rc3h1a)
04121 Ubiquitin system [BR:
ngra04121
]
132899399 (rc3h1a)
Transcription factors [BR:
ngra03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
132899399 (rc3h1a)
Ubiquitin system [BR:
ngra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
132899399 (rc3h1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-C3HC4_4
zf-RING_2
zf-C3HC4_3
zf-C3HC4
zf-CCCH
Prok-RING_4
zf-CCCH_4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
Baculo_IE-1
FYVE
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
132899399
NCBI-ProteinID:
XP_060797213
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All DBs
Position
15:complement(36798582..36854181)
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AA seq
1100 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEENVRKPISLGCGHTVCKMCLNKLHRKACPFDQTTISTD
IELLPVNTALLQLVCPQVPKSQSVTLVKGAEDIKHYDEARMCVEELALYLKPLSNTRGVG
LGTASQSLLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSPLSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ADIDPSPDAPAPTWEQLDKGLVAVKTVVHGLVDFIQNHSKKAGDPQQAPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKFRKMNKRLPLRKPLSQSLTQLNDMDVACNPGLLSD
EGLVVEGLAHKPAIVANGILPVPPGSKLPHLVSRGSVTPYDTARKLGKPDTGSLSAPESP
PDSLDSIPKVVMTSSHPRVPREGLPGHTLSAVSRVPQMPQYPPHQPEAYYSESRVPPSAS
QYESSQYPTGNSYAYQHLQPRYTRPPIDPGLAPYPDPYPVSYPPERQYPAHASDPRYTYP
PHHDSRRHAPYGGHPPIPSYTRDELGHRSPVPMEMPPQTQTAGASSSYLPESRDRYGSES
YNHSSHSRPYSGRNAYARPQPSLDYLHRRRKEIMAQLEERKVVSPPPFTSSPNLAHSYDP
SYTQEVRGQNHYMGENPPAFQNVREPEYAASYSPWSCDTFVPYIGIKDMKSKDGPATGYM
EMQTIEKSLRDPALELQRRAAEVKDDDPIIPFGSLPTVSRFGAISRTSKSGYQPAGLLPG
PPAKHAANAVDYSYGNHGGWSEAPYTQHQTMPSQGHFTERLPPSAQDREQLKMELQQVNQ
QITQQTRCMEREPGSAAGQAAPAEWSTASVSSEQLSQELHQVEREIGMRTREMAREAAGM
KYKLVAGSENGQSEPNLQREDHHLALSEGSNGSSSVVQDCGLGSTSMSSLTSKTSSLSLS
SELVGSSTDLTKNGVAHACS
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtacaagcgccgcaatggaccgagtttctgttgtgtccgatctgcacgcagacg
tttgaggagaacgtgcgcaagcccatcagcctgggctgcggtcacaccgtctgcaagatg
tgcctgaacaagctgcaccgcaaagcctgccctttcgaccaaaccaccatcagcaccgac
atcgagctgctccctgtcaacacagcgctgctgcagctcgtctgccctcaggtaccaaag
tctcaatccgtcaccttggtgaaaggagcggaggacatcaagcattatgatgaagctcgc
atgtgtgtggaggagctggctctctacctcaaacccctcagcaacacccgaggtgtaggg
ctgggcactgcgagtcagagcctcctcagcagacccatgcagaggaagctagtgaccctg
gtgcactgccagctggttgaagaggagggacgtatccgtgctatgcgtgcagcccgctct
ctgggtgaacggacagtcaccgagctaatcctacaacaccaaaaccctcagcagctctct
tccaacctgtgggctgctgtccgagcacgaggctgccagttcctcggccctgccatgcag
gaggaggctctaaagttggtgctgctggcgttggaggatggttcgcctttgtcccgcaag
gttctggttctgtttgtagtccagaggctggagccacgcttccctcaggcctctaaaacc
agtatagggcatgttgtacagctgctgtacagagcctcgtgttttaaggtgactaagcga
gatgaggactcatccctgatgcagctgaaggaagagttcaggacatatgaggctctgcgg
agagagcacgactcccagattgtccagatcgccatggaaggaggcctgcgcattgcccct
gaccagtggtcctccctgctctatggagatcagtcccacaagtcccatatgcagtccatc
attgataagttgcaaaccccagcctcttttgctcagagtgtacaggagctcaccattgcc
ctgcagagaacaggagacccagccaacctcaaccgcctccgaccgcatttagagcttctg
gccgacattgacccgagcccagatgcccctgccccgacatgggaacagctggacaaaggg
ctggtggctgtaaaaacagtggtgcatggtcttgtagacttcatccagaatcacagcaag
aaggcaggagacccacaacaagctcctcagcacagcaaatacaagacgtacatgtgtaga
gacatgaaacagaagggagggtgtcccagaggagccagctgcacctttgcccattcccag
gaggaactggaaaagttccgcaagatgaacaagcgtctgcctttgaggaagcccctcagt
cagtcgctcactcagcttaatgacatggacgtagcttgcaacccaggccttctgtctgat
gaagggttggttgtggagggtctggcccacaaacctgccattgtcgccaatggtattctt
ccagtgccacctggatcaaaactgccacatctggtctcccgcggatcagtgacaccctac
gacacggctcgcaagctgggaaaaccagacacggggagcctcagtgctcctgagtcacca
ccagactcactggactccattcctaaagtggtgatgacttcatctcatcctagagtcccg
agagaaggtctccctggacacacactgtctgctgtctccagagttccccagatgccgcag
taccctccacatcagccagaggcctattactcagaatccagagtaccaccgtctgcttct
caatacgagtcctctcagtatcccactggcaactcctatgcttatcagcacttgcagcct
cgctacactcgcccaccaattgaccctggcttggcgccctatccagacccgtatcctgtc
tcctatcccccagaacgccagtaccccgctcatgcatctgaccctcgttacacctatcca
ccgcatcacgacagtcgccgccatgcgccttatggaggccatcctccaatcccgtcatac
actcgagatgagctgggccacaggagccctgtccctatggagatgcccccacagacgcag
acggcaggagcatcgtcctcctacctcccagaatcacgggacagatacggttccgagagc
tacaaccactccagccacagcaggccgtacagtggcaggaatgcctatgcccggccacag
cccagcctggactacctgcaccgtcggagaaaggaaatcatggcccagctggaggagcgg
aaagtcgtttctcctcctcccttcacctcttctccaaatctggctcattcttatgacccc
agttatacacaagaggtcagggggcaaaatcattatatgggtgagaaccctccagcattc
cagaacgtcagagaaccagaatatgcagcttcatactcgccatggtcatgtgacactttt
gtcccctacattggcatcaaggatatgaagtccaaagatggtccagcaacaggctacatg
gagatgcagactatagaaaaaagcctgagagatccggctctggagctgcagcgtcgagcg
gcagaggtcaaagatgatgatccaatcatcccatttggctcactgcccactgtctctcgc
tttggagcaatatctcgtacgtccaaatcgggatatcagccagctggcctacttccaggt
cccccagccaaacatgctgcaaatgcagttgattacagctatgggaatcatggaggatgg
agtgaggccccttacacccagcaccagaccatgccatctcagggacacttcactgaacga
ctgcccccttctgcccaggacagggaacagctgaagatggagcttcagcaggtcaaccaa
cagattacccaacagacacgctgcatggagagggaaccaggttcagcagctggccaagct
gctccagcggagtggtcgacagctagtgtttccagcgagcagctgagccaagagttgcac
caggtggagagagagattggcatgaggacacgtgagatggcgagggaggcagctggcatg
aaatacaaactggtagcaggaagtgagaacgggcagagcgagcccaatttacagcgggag
gatcaccacctagccctcagtgagggatcaaatggttctagttctgtggtgcaggattgt
ggtttgggcagcaccagcatgtcctctctgaccagcaagacatcctcactcagcctgtca
tctgaactggtgggcagtagcacggatctaaccaagaatggggtggctcacgcgtgctca
tag
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