Neoarius graeffei (lesser salmon catfish): 132899762
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Entry
132899762 CDS
T10798
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03015
mRNA surveillance pathway
ngra03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132899762 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
132899762 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132899762 (cpsf6)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
132899762 (cpsf6)
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Ortholog
Paralog
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GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
Cdc6_lid
Motif
Other DBs
NCBI-GeneID:
132899762
NCBI-ProteinID:
XP_060797871
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Position
15:complement(77587381..77643517)
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AA seq
424 aa
AA seq
DB search
MATASTDGEAAEHLDIYADLNTEEGGDALEAEADALYDDVLTGSVDSVSALGKQESKEED
VKLEVEPVEGKRFSVYVGNFTWWTSDSDLIAMARRQGVKDIVEIKFAENRTNGQSKGYAE
MVVSTEESLKRLLETMPQCKINGEKLACRHVSWRSQAEFEAEARKRIPLRLTPKADSERA
NGGNPSASSPTDCRSLPLPRMLPPAKPPPLMPSFYNTPPPPLPPPLAPPSLPPPLAPPPL
PPPLFNTPPPPPMFHPHIPHIPNTHIINAHTYNLHTPSLHINPAFLPPGPAARSSRSTKF
SQPGDGDFEELINRNRTIASSAITKAMSAATSGDIRMAIESLYTATAVIKQSRVSYDKRC
RMLVESLNNCLNSIETKCFPSSKRHRSRERERSRSRERYRERSSSSERERERERGRDREY
RDRH
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgcgagtactgatggagaggcggcggagcacctagatatatacgcagatcta
aacacagaggagggtggagacgccctggaggcagaagctgacgctctttatgacgatgtg
ttgacgggatctgtggacagcgtgagcgctctgggaaagcaggagtcgaaggaagaggac
gtcaagctggaggtggaacctgttgaaggaaaacggttctctgtctacgtggggaacttc
acctggtggacatcagacagcgatctgatagcgatggcgcgaaggcagggagtgaaagac
atcgttgaaattaagtttgcagagaacaggactaatgggcagtccaaaggctatgctgag
atggtggtgtccacagaagagtctctgaagcgtttattagagaccatgccacagtgcaag
ataaacggggagaaactggcgtgtcgtcatgtttcctggagaagccaggctgagttcgag
gctgaggccagaaaacggattcctctgagactgacccccaaagctgactcggagcgagcc
aacggggggaatccatccgcttcgtctcccacagactgccgttccttacctttacctcgg
atgttgcctccagccaaaccccctcccctcatgccctcattttataacactcctcctcct
cctcttcctcctcctcttgctcctccttctcttcctcctcctcttgctcctcctcctctt
cctcctccactttttaacactcctcctcctcctcccatgttccatccacacattcctcac
attcccaacacacacatcatcaacgcacacacctacaacttgcacacgccctcactacac
atcaaccccgccttcttacccccgggtcctgcagcacgcagcagcagatcgacgaagttc
agccagccgggggatggagactttgaggagctgataaacaggaacagaacgattgccagc
agcgccatcactaaagccatgtctgcagccacgtcaggtgacatccggatggctatcgag
tccctgtacacggcgacagcggtgatcaaacagtcccgtgtgtcctacgacaagcggtgc
cgcatgctcgtcgagtcccttaacaactgtctgaactccatagagaccaaatgcttccct
tcaagtaagaggcaccgttctcgggagcgagagaggagcaggtcgagggagcgatatcgg
gagcgctcgtccagctcagagagggagagagaacgggagcgagggcgtgaccgagagtac
agggacaggcattga
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