Neoarius graeffei (lesser salmon catfish): 132900267
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Entry
132900267 CDS
T10798
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04382
Cornified envelope formation
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04518
Integrin signaling
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132900267 (col4a3)
04518 Integrin signaling
132900267 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132900267 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132900267 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132900267 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngra04147
]
132900267 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132900267 (col4a3)
Exosome [BR:
ngra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132900267 (col4a3)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132900267 (col4a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132900267
NCBI-ProteinID:
XP_060798256
LinkDB
All DBs
Position
16:59787448..59887298
Genome browser
AA seq
1692 aa
AA seq
DB search
MRATLLGISLLGLVTLAHTEECGPDVTVSCNCSQVKGERGEQGFPGLIGLPGQDGNLGDE
GHPGLMGPMGEPGLPGLPGLKGSQGLPGKPGLWGSPGIPGLPGHEGPQGLPGSPGCNGTK
GEPGTPGPPGCSGAVGLQGEDGPAGPKGNTCYFPFPKDVRGENGFPGRDGPKGEPGRQGN
CGPPGPMGCEGPQGECGYIGLPGQKGLEGHSAIPGPQGTKGVRGSPGVTGRRGIKQFATL
HREIKGDSGDPGDRGSTGIQGPPGRCGPKGCKGGPGDPGLLGEDGLNGLQGECGFNGSPG
LRGYEGLPGSLGSKGQKGDRGCAGPPGKCLPRNTAQKGQKGPKGFPGPCGLRGIQGVSGF
PGQSGTPGPGIPGHPGDIGPQGFTGVKGEKGERAPPETGPKGYDGPQGKRGSPGDPGPKG
LPDFHQHQGPSGRRGDKGVQGHEGEMGNPGEEGDKGDLCKVCPFSGLRYGPPGPPGKRGA
KGAPGANGQPGSRGSMGAKGKEGPPGNLGMLGIPGNQGDQGQKGEPGFIGPEDNGDQGDP
GFHGNPGRNGQDGIPGRPGPKGPKGEKGNSGPFGCKGDRGDPGSVGLPGLSGKMGLQGCP
GIGAPGEPGEKGCFGVHGLSGDPGDPGEKGDPGKVYIIPGDPGKCGLKGPKGSPGQLGCL
GPKGLCGLPGPCGKKGEKGLSQPGFSGPRGCKGEKGCQGVQGPPGIGAPGLPGPIGQCGM
PGCKGDSVSGPPGPTGRRGPPGDDGTCGPPGESGYPGNPGVCGQSGRDGCPGPKGSTGYD
GPPGVTGPPGICTAGGPGDKGVQGHKGMPGITGCWGQKGMQGELGCPGEDLPGIIGPCGT
PGVNGELGPPGPPGAQGLKGTNGMPGCKGQRGNCGPPGNPGCPGPTGNPGCPGPPGLKGF
AGIDGQPGCRGPQGSKGDQGDPGPKGQPKTICNPGHPGDPGDRGLPGQPGLKGNKGIEGS
TGSCGNNGLQGCAGPPGPPGERGCKGLPGEPGVCGDPGEIGFFGLPGVKGDKGTPGHCGP
PGDCGTPGANGPKGVKGEPSCPGPGGPGYPGEKGNPGIQGIKGNKGERGMCGPVGCPGPE
GPCGVAGETGRPGQPGTFFPSSLTCFDIFLLIKYSLIYLIIVFFLLFLSGPPGLPGEQGF
DGQPGPPGCVGPRGPPGSSGSPGNPGPPGPKGNQGKDGIPGSAGEKGSAGAPGYGPPGPP
GIRGEPGCKGETGTRGKCGPPGPCGPAGDPGPCGVPGPPGPCGNPGPQGLCVDGPKGDRG
PDGPPGPQGCKGICGPPGPPGLGFKGEKGNNGTCGQRGMSGYPGDTGPQGNRGNPGMKGC
PGNNGEKGLRGEPGPPGQRGMDGSYGPPGFQGEKGQRGPPGTPGEDYFHSDILIPGDPGL
PGAPGEQGPPGRYGPKGRTGPAGIPGLKGPPGQDGDRGVQGLPGPKGSSGLPGLTGPKGF
NGGNGQKGPTGPPGGCVANKHRDNILFARHSQTQAIPKCPHKSTLIYSGYSLLLITGNSH
GHGQDLGTMGSCLQMFSVIPFLYCNVNEVCLFSSRNDHSYWLSTETHLPSNQSSVSGDSL
ATYISRCSVCNSVGNVIAFHSQDSTVPSCPMGWQSLWQGYSFVMHTGEGSQGSGQSLSSP
GSCLENFRNNPFIECSSQGTCSYYLNSYSYWLVALDPRKMFSKPSENSQADYSRIISRCR
VCMKEPACSESS
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgacactcttgggaatatcactcctcggattggtgacgctcgcgcacaccgag
gaatgtggacctgatgtgacggtcagttgcaactgcagtcaagtcaaaggtgaaaggggc
gagcaaggttttccaggtctaattggcttaccagggcaagatggaaatctaggagatgaa
ggccatcctggactcatgggccccatgggtgaaccaggactaccaggactaccaggacta
aaaggctcacagggactccctgggaagccaggattatggggttctccaggaatacctgga
ctcccaggacatgaaggccctcagggactacctggtagcccaggatgcaatggcacaaag
ggtgaacctggtacacctggacctccaggatgttctggagctgtcggtttacagggagaa
gatggtcccgctggccctaaggggaacacgtgctatttcccttttcctaaagatgtgagg
ggagaaaacggtttccctggtcgagatgggccaaagggtgaacctggacgacaaggtaac
tgtggaccacctggaccaatgggatgtgagggacctcaaggagaatgtggatacattgga
cttccaggacaaaagggtcttgagggacattcagcaatacctggcccccaaggtacaaaa
ggcgtgagaggttctcctggcgtaactgggcggagaggtatcaagcaatttgcgacacta
cacagagagatcaagggagattcaggggatccgggagacagaggcagcactggaattcag
ggcccgccaggacgctgtggccctaaaggatgcaaaggaggcccaggagatccaggactt
ctgggggaagacgggctgaatgggcttcagggagagtgcggttttaatggctctcctggg
ctcaggggatatgaagggcttcctgggtcccttggttcaaaggggcagaaaggtgaccgt
ggttgtgctggtcctccaggaaaatgtcttccacggaatacagcacagaaaggccaaaaa
ggacctaagggcttccctggaccgtgtggccttagaggtattcaaggtgtaagtggcttt
cctggacaatcaggcactccaggaccaggtatacctggacaccctggggacattggtcct
caaggctttactggggtcaaaggtgaaaagggagaacgagcacctccagagactggacca
aaaggatatgatggacctcagggaaaacgtggatctcctggtgaccctggtcctaaagga
ctaccagattttcatcaacatcagggcccatcagggcggagaggagataaaggtgtacaa
gggcatgagggtgaaatgggaaatcctggggaagaaggtgataaaggagacctctgcaaa
gtgtgccctttttcaggcctgaggtatggacctccagggccacctggtaaacgtggtgca
aaaggagctccaggtgctaatggacagcctggcagcagaggatcaatgggtgctaagggg
aaagaaggtccccctggcaatctgggtatgctcggtattccaggaaatcaaggggatcag
ggacaaaaaggagaacctggttttataggacctgaggataatggggaccaaggtgaccca
ggatttcatgggaacccagggaggaatggacaagatgggataccaggaagaccaggacct
aaaggtccaaagggagagaaaggcaattcgggtccttttgggtgtaagggtgaccggggt
gaccctggatcagtgggattaccaggattatctggtaaaatgggattgcagggctgccct
gggattggagcaccaggggaacctggtgagaagggctgctttggtgtacatggcctgtca
ggggatcctggagatccaggtgagaaaggtgaccctggtaaggtgtacataatacctgga
gacccagggaagtgtggattaaagggtcctaaaggttcacctgggcaactaggttgcctg
ggacccaaagggttatgtgggcttccaggaccatgtggcaaaaaaggcgaaaaaggactg
tcacaaccaggattttcaggaccgcgtggttgtaaaggtgaaaaaggctgtcaaggtgtt
caaggtccacctggcattggggcacctggtttaccaggacccataggacaatgtggaatg
ccagggtgcaagggcgatagtgtttctggccctccagggcccactggcaggagagggcct
ccaggggatgatggaacatgtgggcctcctggtgaatcaggttatccaggaaaccctgga
gtttgtggacagtcagggagagatggatgcccagggcctaaaggttccacaggatatgat
ggaccgccaggggtgactggtcccccaggtatctgtacggctggggggccaggtgacaaa
ggagtccaaggtcacaaaggaatgcctggaattacaggatgttggggtcagaaaggtatg
cagggtgagcttggatgtccgggagaagatttacctggtattattgggccatgtgggaca
cctggtgttaatggagaacttggtccacctggtccacctggagctcagggattgaagggg
acgaatggcatgcctggttgcaaaggccaacgggggaactgtgggcctcctggaaacccc
ggatgtcctggacctactggaaaccctggatgtcctggaccacctggtcttaaaggtttt
gcaggtattgatggacaaccaggttgtagaggtccacaaggctcaaaaggcgaccagggg
gatccaggtcctaaaggacaaccaaaaactatctgcaatccagggcacccaggagacccc
ggagacagaggtcttcctggtcaacctgggcttaaaggaaacaaaggaattgaaggatca
actggaagctgtgggaacaatggattacaaggctgcgctgggccaccaggtcctcctgga
gagcgaggctgcaaaggcttaccaggtgaacctggtgtctgtggagatcctggagaaatt
ggattttttggtctgccaggtgtcaaaggggacaaggggacacctggtcactgtggacca
ccaggagactgtggtactccaggagcaaatggcccaaaaggggtcaaaggtgaaccaagt
tgtcctggaccaggagggccaggataccctggagagaagggtaatccaggtatacaaggc
attaaaggaaacaaaggagaacgcggaatgtgtggccctgttggttgtccaggaccagaa
gggccttgtggagtggctggagagacaggacgaccaggacaaccaggcactttttttccc
tctagtttaacttgctttgatatctttcttctaataaagtattcgttaatttatttaatc
attgtgttttttttgctctttctttcaggacccccaggattgcctggagagcaagggttt
gatggacaaccaggtcccccaggttgtgtaggaccaagaggcccaccaggttcttctgga
tcaccagggaatccaggtcctccaggtccaaagggaaaccagggcaaagacggcattcct
ggttccgctggagaaaaagggtctgcaggagctcctggatatggacctccagggccacct
ggtatcaggggtgaaccaggctgtaaaggagaaacaggaaccagggggaaatgtggacct
cctggaccatgtggtccagcaggagacccagggccctgtggtgtaccagggccaccagga
ccctgtgggaatcctggtccacagggattgtgtgtggatggccccaagggagaccgaggc
cctgacggcccaccaggaccacaaggatgcaaagggatatgtggtcccccaggaccacca
ggtctcggctttaaaggggaaaagggcaacaatgggacttgtggacaaaggggaatgagt
ggttatccaggagacactggcccacaagggaatcgaggtaatcctgggatgaaaggttgc
cctggtaacaatggagaaaaaggactcagaggagaacctggacctccaggtcaaagagga
atggatggctcatatggcccaccaggatttcaaggagaaaaagggcaaagaggaccacca
ggtacaccaggggaagattatttccacagtgacatactgattcctggagatcctggtctg
cctggagctccaggagagcaaggacctcctggacggtacggtccaaaaggacggacagga
ccagcaggaatccctggccttaaaggaccccctggccaagatggtgatcgtggtgttcaa
ggtttacctggaccaaaaggaagcagtggattaccaggactgacaggacctaagggtttt
aatggtggcaatggtcagaagggtcccacaggtccaccgggaggctgcgtggccaacaag
cacagagataacatcctgttcgccaggcacagtcagacacaagctatccctaaatgccct
cataaatccactctcatctactccgggtactcactgcttctcatcaccggcaatagccac
ggacatggccaagatcttggcactatggggagctgtctacagatgttctccgtcataccc
tttctttactgtaatgtgaatgaggtctgtctcttttcttcccgaaacgatcattcctac
tggctgtccactgagacacacctgcccagtaaccagtcttcagtctcaggtgattcactg
gcgacgtatattagcaggtgttcagtctgtaactccgtaggtaacgtgatagcgttccac
agccaggacagtacagtcccatcatgtcccatgggatggcagtctctgtggcaaggctac
tcttttgtcatgcacacaggtgaaggttcccagggctcaggacagtccctgtcctctcct
ggctcctgtctggagaatttccggaacaatccctttatcgagtgttctagccagggcact
tgtagctactacttaaattcctacagctactggctggttgctctggatccgaggaagatg
ttcagtaaaccatccgaaaactcacaagctgactattcaagaatcatcagtcgctgtcgg
gtgtgcatgaaggagccggcgtgtagtgagtcatcctga
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integrated database retrieval system
