Neoarius graeffei (lesser salmon catfish): 132900464
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Entry
132900464 CDS
T10798
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132900464 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngra03019
]
132900464 (xab2)
03041 Spliceosome [BR:
ngra03041
]
132900464 (xab2)
Messenger RNA biogenesis [BR:
ngra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
132900464 (xab2)
Spliceosome [BR:
ngra03041
]
Complex B
Other components
Prp19-related factors
132900464 (xab2)
Complex C
132900464 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_12
TPR_2
TPR_19
TPR_8
ARM_TT21
TPR_16
TPR_15
ARM_TT21_C
NRDE-2
Tcf25
DUF1478
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
132900464
NCBI-ProteinID:
XP_060798550
LinkDB
All DBs
Position
16:15681500..15725174
Genome browser
AA seq
841 aa
AA seq
DB search
MAISNGKQDVVFEEDDLPYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCITDPAYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQCK
ITRSRRTFDRALRALPITQHSRIWPLYLKFARNLPLPETAIRVYRRYLKLFPENVEEYID
YLRSVGRLDEAAVRLAAVVNDEGFVSKEGKSNYQLWHELCDHISQNPDKVTSLNVDAIIR
GGLTRFTDQVGKLWCSLADYYVRSNHSEKARDVYEEAIQTVVTVRDFSQVFDSYADFEEK
TINARMETTSEMGGDEDDDIDLALRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPQQIINTYTEAVQTVDPLKATGKPHSLWVSFARFYEDNEQLDDARTIFEKATKVN
YKQVDNLAAVWCEYGEMELRHENYDQALRILRKATAIPSRKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKSVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKFAKTIYLLYAKLEEA
YGLARHAMAVYERSTQAVEPEERHLMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRARAIYSYCSQMCDPRMTANFWQTWKEFEIQHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSATGQSGVDDMMMLEQKAQQLAGEAEKDKPKLKEK
ILFVRSDASRSELAELAKQANPDEIDIDDDDDDEEGDGEPDEVQLEQKSIPTAVFGGLKD
D
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggccatttccaatgggaaacaagacgttgtatttgaagaagatgatttgccttacgag
gaagaaatcatcaggaacccgtactctgtgaagtgctggatgcgctacattgagcacaaa
cagaatgcaccgaagtcagtgctgaatatgatttatgaacgagcgcttaaagaactcccg
ggcagttacaaattgtggtacaactacctgagagagaggaggaaacagataaagggaaaa
tgcatcacagatccggcgtatgaggaggtcaacaactgccacgagagagcactggtgttt
atgcacaagatgccgaggatatggctggattactgtcagttcatcgtatctcagtgcaaa
atcacaagaagccgtcgcacgtttgaccgagcgctcagagctctgcccatcacccagcac
tcccgcatctggcccctctatctcaaatttgcccgcaatttacccttacctgagaccgcc
atccgggtttatcgccgatatctcaagctttttccagagaatgtggaggagtacatcgat
tacttgcgctctgtaggacggctggacgaggcagcggtccgactagccgctgtggtgaac
gacgaaggctttgtttcaaaagaaggaaagtcaaactaccagctctggcatgagctgtgt
gaccacatctcccagaacccagacaaggtgacctcgctgaatgtcgacgccatcatccgt
ggtggcctcacccgcttcacggaccaggttggcaagctgtggtgctctctagctgattac
tatgtccgcagcaatcactctgagaaggcacgtgacgtgtacgaagaggcgattcagact
gtcgtcactgtacgagatttcagtcaggtgttcgacagctacgccgactttgaagagaaa
acgatcaatgccaggatggagaccacatccgagatgggaggagatgaagacgatgacatt
gatctggcgttgcgcttggcccggttcgagcagctgatcacgcgccggccactcttattg
aacagcgtgctgctgcggcagaacccacacaacgtccacgagtggcacaagagagtcaag
ctctatgaaggcaaccctcaacagataataaacacctacactgaagctgtgcagaccgtg
gaccctctgaaagccacagggaagcctcactcactctgggtctccttcgcccgcttctac
gaggataacgaacagctggatgatgccagaaccatcttcgagaaggccaccaaggtgaac
tataagcaggtggacaacctggcagcagtgtggtgtgagtacggagagatggagttacgg
cacgagaactacgaccaggcgttacgtatactcaggaaagccacggcgatcccatcgaga
aaagccgagtactttgattcttcagaaccagtgcagaatcgagtgtataaatccctgaag
gtctggtccatgctggcagatttggaggagagcctcggcaccttccagtcaactaaatcg
gtgtatgaccgcattattgatctccgcattgccacgcctcagatcatcatcaactatgcc
atgttcctcgaggaacacaattactttgaggaaagctttaaggcatatgagcgtggcatt
gcgctcttcaggtggccaaacgtgtatgacatctggaacacgtacctcaccaagttcatc
gatcgctatggaggcaagaagctggagcgagcgcgagacctgtttgagcaggctttggat
gggtgtccacaaaagtttgccaaaaccatctacctgctgtatgctaagctggaggaggca
tatggactggcacggcatgctatggctgtgtatgagagatcgacgcaggctgtggagcct
gaagagcgccacctgatgttcaacatttacatcaagagagctgcagagatctacggagtc
actcacaccagagccatctatcagaaagccattgaggttctcccagatgagcattcccgg
gacatgtgtctacgctttgctgacatggagagcaaactgggtgagatcgatcgtgcgaga
gctatttattcctactgctcccagatgtgtgatcccaggatgacggctaatttctggcag
acgtggaaggagtttgagatccagcacgggaacgaggacacgatccgcgagatgctccgg
ataaagagaagcgtccaagcaacctacaacacacaggtcaacttcatgtcctcacagatg
ctcaaagcaaccaccagtgctacaggccagagtggtgttgatgacatgatgatgttggaa
cagaaagcacagcagctggctggagaagctgaaaaggacaaacctaaactgaaagagaag
atcctcttcgtcaggagtgacgcctctcgcagtgaactggctgaactagccaaacaggct
aacccagatgagatcgacattgacgatgatgatgatgatgaagagggagatggagaacca
gacgaggtgcagctcgagcagaagagcatccctacggctgtgttcggaggactgaaggac
gactga
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