Neoarius graeffei (lesser salmon catfish): 132900576
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Entry
132900576 CDS
T10798
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04518
Integrin signaling
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132900576 (col1a2)
04518 Integrin signaling
132900576 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132900576 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132900576 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132900576 (col1a2)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132900576 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
132900576
NCBI-ProteinID:
XP_060798734
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All DBs
Position
16:complement(29206176..29226304)
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AA seq
1353 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLATCQSLAPRGPKGPRGDRGPKGPDGKPGKPGFPGPPGPPGP
PGLSGNFAAQYDGAKGPDVGPGPPGLMGPRGPAGSPGAPGPQGLQGHAGEPGEPGQSGPP
GPRGPPGSPGKSGEDGNNGRPGQPGDRGSVGPQGARGFPGTPGLPGMKGHRGYNGLDGRK
GEPGEAGAKGETGAHGANGTPGQRGARGQSGERGRPGPAGPAGARGADGNTGATGPAGPV
GAAGPPGFPGGPGPKGEIGLAGSTGPAGAQGQRGEPGPNGVAGPVGPAGNPGANGLAGAK
GAAGTPGVAGTPGFPGPRGGPGPQGPSGAAGPRGLTGDPGPVGVKGEAGVKGEPGNVGPH
GLTGAPGDEGKRGSTGEHGAAGPVGMRGPRGAAGTRGLPGQGGRGGPIGMPGARGSSGPA
GARGPPGDAGRPGEPGLVGARGLPGSPGSGGPQGKEGPAGAPGQDGRSGPPGPTGPRGQP
GNIGFPGPKGPSGEPGKHGEKGPAGASGLRGPPGPDGNNGPAGSVGAAGGSGEKGEAGPA
GAPGFQGLPGPAGPAGEPGKAGDRGIPGDQGPAGVAGGKGERGNPGPAGAIGAQGPIGPR
GAPGTPGLDGNKGEPGAAGLPGAAGPQGTVGMPGERGAAGSPGVKGEKGESGHRGLEGNA
GRDGARGAPGPTGPPGPAGTNGDKGEAGAAGPAGPSGARGVPGERGEAGPAGPPGFAGPP
GADGQAGAKGEKGPAGGKGDVGPSGAVGPVGSPGPAGPAGPAGPPGTRGETGPSGLTGFP
GAAGRVGPPGPAGIAGPPGVTGPAGKDGPRGIRGDSGPTGPQGETGHLGPPGPAGDKGSP
GEAGSKGAAGIPGPAGLIGPAGIPGLPGSRGERGNPGGVGAVGEPGRVGPAGSPGARGPS
GNIGLPGLTGPQGEAGREGSPGNDGPPGRHGAAGVKGDRGEPGSPGHVGPAGASGPVGPS
GPAGRPGNRGEAGPSGAVGSAGPAGARGAPGPAGARGEKGGAGDKGDRGMKGLRGHPGLQ
GMPGPSGHSGDSGPAGPSGPSGPRGPAGPSGPAGKDGRPGAAGPVGPVGHRGAPGSVGPV
GPPGSPGLPGPPGAAGGGYDISGGYDEYRADQAALRAKDYEVDATIKSLNTQIDNLLSPE
GSKKNPARTCRDIRLSHPDWTSGFYWIDPNQGCTMDAIKAYCDFTTGQTCIYAQPESIAR
KNWYRSTQEKKHVWFGETINGGTEFGYNDETLSPQSMATQLAFMRLLANQAVQNITYHCK
NSIAYMDGENSNLKKAVLLQGSNDVELRAEGNSRFTYSVLEDGCTKHIGQWSKTVIEYRT
NKPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtgacatcgtaccttgca
acatgtcaatcgttggccccaaggggacctaaaggacctagaggtgacaggggtcctaaa
ggccctgatggcaaacctggcaaacctggatttcctgggcctcccgggccccctggtccc
cctggtcttagtggaaactttgctgctcagtatgatggcgctaaaggacctgacgttggc
cccggacctccgggtttgatgggacctcgaggccctgctggatcacctggtgcccctgga
cctcagggactccaaggacatgctggcgagcctggcgagcctggacagtctggaccccct
ggacctcgtggaccccctggatctcctggcaagtctggtgaagatggtaacaatggcaga
cctggacagcctggagatagaggctcagttggcccccagggtgctcgtggtttcccagga
actcctggacttccaggcatgaagggacacagaggctacaatggtcttgatggacgaaaa
ggagagcctggtgaagccggagctaagggtgagactggagctcatggtgcaaatggaacc
cctggacaaagaggtgcacgtggtcagtctggtgagagaggtcgtcctggccctgctggt
ccagctggtgcccgtggtgctgatggtaacactggtgctactggccctgctggtccagtt
ggagctgctggccctccaggtttccctggtggccccggacctaaaggagagattggactt
gctggttccactggcccagctggagctcaaggacagagaggagagcctggaccaaatggt
gttgctggcccagttggtcctgctggtaaccccggtgctaatggtctcgctggtgctaag
ggagctgctggcacccctggtgttgctggtacccctggtttccctggcccaagaggaggc
cctggtccccagggaccttctggagctgctggccccagaggccttactggtgacccagga
cctgtcggagtgaagggagaagctggtgtcaagggtgagcctggtaacgttggccctcac
ggtctcactggtgctcctggtgatgagggcaagagaggctcaactggtgagcatggagca
gctggacctgttggtatgcgtggacccagaggagcagctggaactcgtggtcttcctggt
caaggtggtagaggaggaccaattggcatgcctggagcaagaggcagtagtggtcctgct
ggtgcacgtggacctcctggtgatgctggccgtcctggtgagcccggtctggttggagcc
agaggtctccctggtagccctggaagcggtggaccccaaggaaaggagggacctgctggt
gctcccggtcaagatggccgcagtggacctcctggcccaactggacccagaggccagcct
ggtaacattggattccccggccctaaaggaccttctggtgagcctggcaaacatggagag
aagggacccgctggtgcttctggtctgagaggcccccctggtcctgatggtaacaatgga
cctgctggttccgttggagctgctggtggttctggtgagaagggagaggcaggacctgct
ggtgctcctggtttccagggtcttcctggacctgctggacctgctggtgagcctggcaaa
gctggagacagaggtattcctggagaccaaggtcccgctggagttgctggtggcaaggga
gagcgtggtaaccctggacctgctggtgccattggcgcccagggacccattggtcctcgt
ggagctcctggtactcctggccttgatggaaacaagggtgagcctggtgctgctggtctt
cctggtgctgcaggtccccagggtactgttggcatgcctggtgagcgtggtgcagctggt
tctcctggagtcaagggtgagaagggtgagtctggacacagaggcctagaaggcaatgct
ggaagagatggtgcacgtggtgctcctggacccactggacctcctggacctgctggtacc
aatggtgataagggtgaggctggtgccgctggtcctgctggcccttctggtgctcgtggt
gttcctggagagcgtggtgaggctggccctgctggacctcctggatttgctgggcctcct
ggtgctgatggccaggctggagctaaaggtgagaaaggtcctgctggtggaaagggtgat
gttggaccttctggcgctgttggtcctgtcggtagccccggacctgccggtcctgctggt
cctgctggcccccctggtactcgtggtgagactggtccctctggtttgactggtttccct
ggtgctgctggaagagttggtcctcccggtcctgctggtattgctggacctcctggtgtc
actggtcccgctggaaaggatggtcctcgtggtattcgtggtgattctggacccactgga
cctcagggagagaccggccatcttggacctcctggcccagctggtgacaagggatccccc
ggagaggctggttctaagggagctgcaggtattcctggacctgctggtttgattggacct
gcgggaatccctggtcttcctggtagcagaggtgaacgtggtaatcccggtggtgttggt
gctgttggtgagcctggtagagttggccctgctggttcccctggcgcccgtggtccatct
ggtaacattggtctgcctggtctgactggtcctcagggagaggctggacgtgagggtagc
cctggtaatgatggacctcctggccgtcatggtgctgctggtgtgaagggtgaccgtgga
gagcctggatctcctggccatgttggacctgctggtgcttctggacccgtgggaccatct
ggtcctgctggcagacctggaaaccgtggtgaggccggaccctctggagctgttggatca
gctggtcctgctggtgcaagaggtgcccctggccctgctggagcccgtggtgagaagggt
ggggctggagacaagggagatagaggcatgaagggactgcgtggacatcctggtcttcag
ggaatgcctggacccagcggacatagtggtgatagtggcccagctggtccttctggacct
tcaggtcccagaggccctgctggtcccagtggcccagctggtaaggatggtagacctggc
gctgctggtcctgttggacctgttggacatcgtggtgcccctggatcagttggaccagtt
ggacctcccggatctcctggtctccctggaccccctggtgctgctggtggtggatatgat
atttctggtggctatgatgagtacagagctgaccaggctgctctcagggctaaggactac
gaggtggatgccactatcaagtccctaaatactcagatcgacaacctgctctcacctgag
ggctccaagaagaaccctgcccgcacctgccgtgacatcaggctcagccaccctgactgg
accagcggtttctactggattgatcctaaccagggctgcaccatggatgccatcaaggcc
tactgcgacttcaccacaggtcagacctgtatctatgctcagcctgagagcattgcacgc
aagaactggtacagaagtacccaggagaagaagcatgtctggttcggagagaccatcaat
ggtggcactgagtttggctataatgatgagaccctgagcccacagtccatggctacacag
ctggccttcatgcgtctgctggccaaccaggctgtccagaacatcacctaccactgcaag
aacagcattgcctacatggatggtgagaacagcaacctgaagaaggctgtcctgctgcag
ggctccaatgatgtggaactccgggcagagggcaacagccgcttcacctacagcgttctg
gaggatggctgcactaaacacattggccagtggagcaagacagtcattgaatacagaaca
aataaaccatctcgcctgcccatcctcgacattgcacctttggacattggtggcgctgat
caagaatttggtctggacattggcccagtctgtttcaaatga
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