Neoarius graeffei (lesser salmon catfish): 132900864
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Entry
132900864 CDS
T10798
Symbol
smarcc1b
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
132900864 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngra03021
]
132900864 (smarcc1b)
03036 Chromosome and associated proteins [BR:
ngra03036
]
132900864 (smarcc1b)
Transcription machinery [BR:
ngra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
132900864 (smarcc1b)
Chromosome and associated proteins [BR:
ngra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
132900864 (smarcc1b)
PBAF complex
132900864 (smarcc1b)
GBAF(ncBAF) complex
132900864 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
DUF919
Motif
Other DBs
NCBI-GeneID:
132900864
NCBI-ProteinID:
XP_060799180
LinkDB
All DBs
Position
16:54930068..54976827
Genome browser
AA seq
982 aa
AA seq
DB search
MAAQTAGCSAAGSAGDKAAGSSALSRKKDGGPCAEFWXSGETVSQLETIRTWIGKHYKKY
VQVDAPSTKSLSALIIQLQQFQEDAFGRNASNPALTKLPMKCFLDMKPGGALCHILGSAY
KFKTEQGWRRFDLQNPSRVDRNVEMFVSVEKTLVQNNLLRRPVVYLSPELDQKQASKLRD
IIMRHKGSVTEDKIQATHQIYPTPTSVDEEDWFRPVMRVSQHVMVHWGMYPDSYDAWLSA
SEVDVDVEEAPTSERPWKVHVKWLLDTDAFNEWMNEEDYEVDDGKRSVSYQRRIYPRDEE
ESKTSGKKRRRSPSPPTSESRKKGGKKGSYKRRSQQEEAEPEEDLTKDMEDPTPVPNMEE
VKLPKNVNLKKDSENTPVKGGTMADLDDQEDEFLSGVRDEDDQGREFGRGLEGEESATEQ
THHIIIPSYAAWFDYNCIHRIERRALPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEY
LTSTSCRRNLTGDVCALMRVHAFLEQWGLINYQVDAESKPLPMGPPPTPHFNVLTDNPTA
LVPLQHRPLQVSASQHMLHFPEKSREKPSDLQNFGLRTDIYAKKHPKTKGANAGREWTEQ
ETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSEASMGPLAYQPV
PFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREQASPELLNPSILKIQDPGQ
NLTELEPTFGMQSSNVSRPETDQLEKTDVSRLEKLEFDPEHHEKPKGETTAGEGERVKNE
EKDEPEGERGEESKAEERLEVVQTQGEHGDRRRRAELELVEVNIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQNF
HMEQVKYAEIKARQQLEQQQSGASQSSGPAFNPLHHGRPVGSGAAGQIMGSQHAGAPNGT
YPTPPSSQSEGATPVSRPPMDS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagaccgcgggatgttcagccgcaggttcggcgggtgataaagcggccggc
agctcggcgctgagtcggaaaaaggacgggggtccgtgtgctgagttctggnagagtgga
gagactgtgtcacaactcgagacgattcgcacttggattgggaagcattacaaaaagtat
gtacaggttgatgctccttccactaagtctctctcagcgctgatcatccagctccagcag
tttcaggaggatgcgtttggtcggaacgcgagcaacccagccctcactaaactgccgatg
aagtgtttcttagacatgaagccagggggcgctctctgtcacatcctcggctctgcgtac
aagtttaaaaccgagcagggctggcgccgtttcgacctgcagaacccgtcccgagtggac
cgcaatgttgagatgtttgtcagtgtggagaaaacactggttcagaataatcttctgaga
aggcctgtggtgtacttatcacctgagctggatcagaagcaggccagcaaactcagagac
atcatcatgagacacaagggttcagtcacagaggacaagatacaagccacccatcagatc
taccctactcccacctcagtagatgaagaagactggttcagaccggttatgcgagtcagt
caacatgttatggtacactggggcatgtatccagacagttatgacgcgtggctgtcagcc
agtgaagttgatgtggatgtcgaggaagctcccacgtctgaacgaccttggaaggtacat
gttaagtggcttcttgacacggacgcattcaacgagtggatgaacgaggaagactatgag
gtggatgatggcaaaaggagcgtgagttaccagaggcgcatctacccccgagacgaggag
gaatccaagacatccgggaagaagagaaggcgttccccttctccacccacatccgagtcc
cggaagaaaggagggaaaaagggctcgtataaaaggcgtagccagcaggaagaggcggag
ccggaagaagacctgacgaaagacatggaggacccgacacctgtgccgaacatggaggag
gtcaaactgcctaaaaatgtgaacctgaagaaagacagtgagaacacaccagtgaaagga
ggaaccatggctgacttggatgaccaggaagatgagtttctgtctggagtcagggatgag
gatgatcagggacgggagttcgggcgtgggcttgaaggggaggagagtgccacggagcag
acgcaccatatcatcatccccagctacgccgcatggtttgactacaactgtattcatcgg
atagagaggagagcactgcccgagttcttcaacgggaaaaacaagtcgaaatcaccagaa
atatatttggcatatcgtaacttcatgatcgacacgtatcggctaaaccctcaggagtac
ttgacctccacctcctgcagacgcaaccttacaggagatgtgtgcgcccttatgagagtc
catgcatttctggagcaatggggtctgataaattaccaggtggatgctgagagcaaacct
cttccaatgggccctccacctacacctcactttaatgttctcacagataatcccacagcc
ctggtccctctacagcacagaccattacaggtttcagcttctcagcatatgcttcatttc
ccagagaagagcagagaaaagccttcagaccttcagaactttggtctacggaccgatatt
tacgcaaagaagcatcccaagactaaaggagcaaacgcagggcgtgagtggacagaacaa
gaaactcttttgcttttggaggcattagagatgtataaagatgactggaataaggtctct
gagcatgtggggagtcgcacacaggatgagtgtatcctgcatttcctgcgtttgcccata
gaggacccgtacttggagaactcggaagcttcaatgggacccctcgcctaccagcctgtt
ccctttagccagtcaggaaaccccgtcatgagcaccgtggcgttcctcgcctcagttgtg
gatcccagagtggcctctgctgctgccaaagcagccctggaggagttctctcgcgttcga
gaacaagcttctccagagctgctcaatccctccatcctcaaaatccaagatcctggccaa
aatttaacagaacttgagcccacctttggaatgcagtcgagtaacgtatccagacccgag
acagaccaactcgagaagaccgatgtatccagactggaaaagctggagtttgacccagaa
caccatgaaaagccaaagggggaaactaccgcaggagagggagagcgagtaaagaatgaa
gaaaaggatgagcctgaaggggagagaggagaagagagcaaagcagaggaaaggttggaa
gtggtccagacacaaggggaacatggggataggaggaggagggcggagcttgaattggtt
gaagtgaatattgccacagcagctgcagctgccctggcctctgctgctaccaaggccaaa
cacttggctgctgtggaggaaaggaagattaagtctcttgtggctctgctggtagaaact
cagatgaagaagctggagataaagctgaggcactttgaggagctggagactatcatggac
cgggagaaagaggctctggagcagcagcgacagcagttgctgtcagagaggcagaacttc
cacatggagcaggtgaagtacgcagagataaaggcacgtcagcagctggaacagcaacag
agtggagcctcgcagagcagtggacctgcgtttaaccctctgcatcatggtcgtccagtg
ggcagtggagcagcggggcagataatgggctcacagcacgccggtgctcctaatggcacc
tacccaactccaccttcctcccagtctgaaggggccacgcctgtttcccggcccccgatg
gacagctga
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