Neoarius graeffei (lesser salmon catfish): 132900917
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Entry
132900917 CDS
T10798
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra04382
Cornified envelope formation
ngra04510
Focal adhesion
ngra04512
ECM-receptor interaction
ngra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132900917 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132900917 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132900917 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
132900917 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ngra04147
]
132900917 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
ngra00536
]
132900917 (col4a4)
Exosome [BR:
ngra04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
132900917 (col4a4)
Glycosaminoglycan binding proteins [BR:
ngra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132900917 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
132900917
NCBI-ProteinID:
XP_060799275
LinkDB
All DBs
Position
16:complement(59644169..59788259)
Genome browser
AA seq
1657 aa
AA seq
DB search
MTRPHRIASLWWLLLIHAYRQGIQMVECSEDCGQRNISLCPCVPLKGSRGPSGAVGEDGR
KGNVGQPGPRGLFGPKGHRGSEGNPGAPGPKGDVGTNGVNGNPGFNGTHGEPGPVGLPGL
PGIDGCKGLRGDPGISGRRGLSGGPGPQGCQGPKGPKGDCAYKHIMNPGLRGCDGPPGDP
GPQGAPGPCGPQGAQGKPGGPGLLGKNGVPGVRGPPGDPGKPIPGPSGDEGDPGPEGPPG
PFELVETPEEYKGAKGEKGPDGDCGLPGSNGTDSPKGETGEKGVAGCPGATGDCGSPGHS
GRQGIQGKRGNPGLPGEHGCPGQKGISGDPGPQGKITYYSCPAGCVGEKGSPGAPGIKGD
MGLIGLPGPPGPPGESMPGPPGWPGTIGSRGFQGDKGEPGKRSTEKTPGEPGKPGPQGPK
GIQGAPGPHGSYCVPGQRGVPGFEGDKGLRGPTGIQGRKGDNGDCACETSPKIIGSQGLQ
GESGEPGAPGLQGFPGPQGEHGPDGDPGLQGESGFPGFPGYRGMKGEKGNLFLMKIKGEK
GQPGTTGTCGSPGVSGKRGDSGQPGPAGDCGSEGDSLKGFPGDRGCPGDIGFKGERGPCG
PQGLGIPGPVGCRGQEGDQGPPGLRGTVGRKGNKGDTQPCIPGSPGVRGPKGEHGDQGCL
GEQGNPGPSGDDGVNGPKGEKGNIGSPGPCGPTGLCGFEGDPGDIGLDGQSLQGEPGICG
NPGPTGLKGCIGDSLVGYQGPLGPIGFNGCSGAKGVPGAPGSLGQEGSPGVPGSRGRKGA
PGGNGQPGRKGSIGPYPVQCDSGTIGDPGLPGDPGCSGNPGERGEKGCAGPPGLPGRGLK
GETGRPGLPGVRGYCGPQGCPGSDGESGGPGTNGVKGSPGQPGRDGLPGGVGECGHQGPP
GIKGEKGFDGRQGCLGHDGEKGEKGPCGIPGMPGEVHVNAEKGKNGTPGMPGPCGFPGPR
GDKGVKGECGADGIPGYPGPPGCESGPPGPQGPCGKPGEPGPKGSPGLKGYCGFPGVPGE
PGDPGLSGSPGTPGFCGYNGQKGERGDSIGTPGPPGLRGPCGQNGCPGPVGDQGDSGDAG
PPGQCGLPGKPGPVGNRGHCGPQGVIGPPGPRGKCGAEGPPGPPGPPGLDGPSCPCGPPG
SPGPPGLHGLNGVNGVKGDPGTNGQGVPGDRGPKGQTGKKGCTGDPGPQGPIQQGVKGFQ
GPPGLPGDAGCPGPCGPCGSPCKNPQQGQCGEMGFTGCDGTPGPRGPMGPAGLAIPVQGD
QGYPGSPGLQGCKGRKGACGPCGQDGVSGPQGQKGEKGDAGCAGVPGVPGIPGANGNTGI
KGLKGPKGDEGFFGRPGDVIYIDSNKPVPGPHGLPGPPGELGFPGSIGVQGNEGPKGSKG
EVGDPGLDGQPGPPGLIGLSGDQGQKGARGSPGVPGQQGPPGDQGPPGPSERFNSGFLLV
IHSQSTEIPKCPQNTSKLWEGYSLLYLEGQERAHTQDLGSGGSCMRIFSTMPFANCNQRA
CQYATRNEKSYWLSTAAVLPTTPVSGLNIQRYISRCVVCEAPSAATAIHAQDRVHPSCPR
DWLTLWTGYSFIMYTGSGDEGGGQSLISSGSCLQNFLTHPFVECQGRQGTCHYFTNLYNF
WLTHVPEEFSYRPKIEILKGEAEQLDHVGRCTVCLRS
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccaccggatcgcctcactctggtggcttttactgatacacgcatacaga
cagggcattcaaatggtggagtgctctgaggactgtggccagcgcaacatcagtttatgc
ccatgcgttccactaaaaggttccaggggaccttctggtgctgtgggggaagacggtaga
aaggggaatgtaggtcaaccaggacctcgggggctatttggaccaaaaggacaccgaggt
tctgaaggaaatcctggagctcctggaccaaaaggagatgtcggcacgaatggagtaaat
ggaaatcctggatttaatggaacacatggtgagcctggacctgttggccttcccggtctt
ccaggaattgatggctgtaaagggctccgaggagatccaggaatcagtggccgtcgtgga
ctaagtggtggacccggaccacaaggttgtcaaggaccaaagggacccaaaggagattgt
gcatacaagcacatcatgaatcctggtctacgtggatgtgatggacctcctggtgatcct
ggacctcaaggagctcctggaccttgtggcccacaaggtgcacaggggaagcctggagga
cctggtttactgggtaaaaatggtgttccaggtgtacgaggtcctccaggagacccagga
aagcccattcctggtccaagtggagatgagggagatccagggccagaaggcccaccaggc
ccctttgaactagttgagacaccagaagaatataaaggagccaagggggaaaaaggacct
gatggagactgtggactccctggatcaaatggaactgacagccctaagggggaaacagga
gagaaaggcgtcgcaggttgtccaggtgctacaggagattgtggctctcctgggcattct
ggcagacaaggaattcagggtaaacgaggaaaccctggactccctggtgaacatggttgc
ccaggacaaaagggaatctcaggtgatcctggtccacaaggaaaaataacatattactct
tgtccagcaggttgtgtcggtgagaaaggatcacctggggcccctggtatcaaaggagac
atgggattgataggcctgccaggccctcctggtccaccaggagaatctatgcctggcccc
ccaggctggccagggacaataggttcacgaggctttcaaggtgataaaggagaaccagga
aagagatccactgaaaagaccccaggggaacctgggaaaccagggccccaagggccaaaa
gggattcaaggggctcccggcccccatggatcctactgcgttcctggccaaagaggagtt
cctggttttgaaggagataaaggtctacgcggtccaacaggcattcaggggaggaaaggt
gacaatggtgattgtgcttgtgagaccagtcctaaaattattggctctcagggtttgcaa
ggtgaatcaggagaacctggtgctccaggactgcaggggtttcccggtccacaaggtgaa
catggccctgatggagatcctgggctacaaggagaatcaggttttccaggttttccaggt
tacagggggatgaaaggggaaaaaggaaacctgtttctgatgaagatcaagggtgaaaag
ggacagcccgggacaacagggacttgtggttctccaggagtcagtggcaagagaggggat
tcagggcagcctgggcctgcaggtgattgtggttcagagggtgacagtttaaaaggtttt
cctggtgatagaggttgcccaggagacataggcttcaaaggtgaaagaggtccctgtgga
ccacaaggcctaggtattcctgggccagtaggttgtcgaggacaagaaggtgaccaggga
cctccaggattgagaggaactgttgggcgtaaaggaaacaaaggtgatacacagccctgt
atacctggcagtcctggagtccgtggaccaaagggagagcatggtgaccaaggatgttta
ggagagcagggcaatccagggccttctggggatgatggagttaacgggccaaagggagag
aaaggaaacattggaagtcctggtccttgtggccctacagggttatgtggatttgagggg
gatccaggagacattggactagatggccagagtttgcaaggagaaccagggatatgtggt
aatcctggacccactgggttaaaaggatgcattggagactcattggtaggatatcaaggg
ccattgggcccaattgggttcaatggctgttcaggagctaaaggagtccctggagcccca
gggtcacttggtcaagaaggctctcctggtgtacctggatcccgaggtaggaaaggagct
ccaggcggaaatggtcagcctggaagaaaagggtccattggcccatatccagtccagtgt
gacagtggaacaataggtgacccaggactgccaggagacccaggctgtagtggaaatcca
ggtgaacgtggtgagaagggatgtgctggaccccctggccttcctggaaggggactgaaa
ggtgaaactgggagaccaggtctacctggtgttcgggggtactgtggtcctcagggatgc
ccaggatcagatggagaatctggtggtcctggtactaatggtgtgaaaggttctcctgga
caacccggaagggatggcttacctggtggtgttggtgagtgtggacatcaaggaccacct
gggataaaaggagagaaaggctttgatgggaggcaaggttgtctggggcacgatggagag
aaaggagaaaaaggtccctgtggaattcctgggatgccaggagaggttcatgtgaatgct
gaaaaagggaagaacgggacacctggaatgcctgggccatgcggttttcctggtccccga
ggtgataaaggtgtgaaaggggaatgcggtgcagatgggattccagggtatcctggacct
ccaggttgtgagagtggccctccagggccacaaggtccctgtggaaagccaggtgaacct
ggacccaagggctcaccagggttgaaaggctattgcggatttcctggagtacctggagag
ccaggtgacccagggttgagtggatcgccaggaaccccaggtttctgtggatataatggg
cagaaaggagaaagaggagattctataggtacaccaggacctccaggtctgagaggccca
tgtggacaaaatggctgcccaggtcctgtaggagatcagggagattcaggagacgcaggt
ccacctggtcagtgtggactgcctggcaaacccggtcctgttggaaatcggggacattgt
ggacctcaaggtgttattggtcccccgggtcccagaggaaaatgtggcgccgagggtcct
ccagggcctcctggacctcctggacttgatggaccatcatgcccctgtggcccaccaggt
tctccagggccaccaggactacatggattgaatggagtaaatggtgtgaagggtgaccca
gggacaaacggacaaggtgtacctggggacagggggcctaaggggcagacaggtaaaaag
ggttgtacaggagaccctgggccacagggtcctatccagcaaggggtcaaaggcttccag
ggcccgcctggattgccaggtgatgctggttgtcctggtccttgtggtccttgtggcagt
ccctgtaagaaccctcaacaaggacagtgtggtgaaatgggatttacgggctgcgatggc
acaccaggacctaggggacccatgggaccagctggcctggcaatacctgtgcaaggggat
caggggtacccaggttcaccaggtcttcagggatgtaaaggaagaaaaggtgcttgtggt
ccctgtggccaggatggggtttcaggcccccaaggacagaaaggtgagaaaggtgatgca
gggtgtgctggagttcctggagttcctggcataccaggagcaaacggcaacaccgggatc
aaggggctgaaaggaccaaaaggagatgaaggtttttttggaagaccaggggatgttatt
tatatcgattccaacaaaccagttccaggtccacatgggcttcctggtcctcccggtgaa
cttggatttccaggatctataggagttcagggcaatgaggggccaaaaggttcaaaaggc
gaagtgggagatccagggttggatggtcaacctggaccacctggccttatcggactttct
ggagaccaaggacagaagggtgccagaggttcaccaggcgtgccaggccaacaaggacct
ccaggagatcaaggtcctcctggcccctctgagaggttcaactctggcttcctattggtc
attcacagccaatcaacagagatacccaagtgtcctcaaaatacgtccaaactgtgggag
ggatatagcttactatatctggaggggcaagaaagagcacacacgcaggacctaggatcg
ggaggttcatgtatgcgtatcttcagtactatgccctttgcaaactgcaaccagcgtgct
tgccagtatgccacccgcaatgaaaaatcctattggctttccaccgctgctgtattacct
accacgcccgtgtctgggttgaatatccagcgatacatcagcaggtgtgtggtgtgtgag
gctccatcagcagccactgccattcacgcccaggacagagttcatcccagctgcccaagg
gattggttgacactctggactggatattctttcatcatgtacactgggtcaggagatgaa
ggaggcggtcagtctctcatatcgtcaggaagctgcctgcagaatttcctcacgcatcca
tttgtggagtgccagggtagacaaggcacatgccactacttcaccaacctctacaacttc
tggctcacacacgtgcctgaggaattcagctacagaccgaaaatagagatcctaaaagga
gaagctgagcagcttgatcacgttggccgatgcactgtctgcttgaggtcgtga
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integrated database retrieval system
