Neoarius graeffei (lesser salmon catfish): 132901708
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Entry
132901708 CDS
T10798
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ngra Neoarius graeffei (lesser salmon catfish)
Pathway
ngra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ngra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132901708 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ngra03041
]
132901708 (dhx16)
Enzymes [BR:
ngra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132901708 (dhx16)
Spliceosome [BR:
ngra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132901708 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
Flavi_DEAD
AAA_30
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
132901708
NCBI-ProteinID:
XP_060800257
LinkDB
All DBs
Position
17:complement(43735487..43834339)
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AA seq
1054 aa
AA seq
DB search
MANLEQWVSDRLHDILGLSDRYVAQFMIGLAQKSSAPQDFVARLQQTGTIDIDQRVTAFA
LELYNKVPKKQVVEKPSRAIERQVMEMERKNKTYTLLEDSDSDGEVSREGGKEKRSREKD
RGKKRKHIRKKRDESPVSSEEDGKKSKSFLHEAKKAQKDDDEEEEWEKEERERLQDLEER
DAFAERVKQRDKEKTRHILERNDKKAYEEAQKRLKMAEEDQKKMLPELRKCSRREYLAKR
EQEKLEDLEAEIVDEEYLFSGDSLTEQERKDLEYKKQIRDLARDYKKAGAKEKEERKNRY
FMPEEIRNKNIPQRDMELEFDEDLKEGGGEQGRWEEARVATATLQFGAREEREQRIKEEK
EKYQLVLEEDEMINFVSSAITMKGTLSEKDTEPELSQAEKQKQSIQEVRHSLPIFPYRGD
LLTAIRDHQILVIEGETGSGKTTQIPQYLMEDGYTKGGMKVGCTQPRRVAAMSVAARVAQ
EMAVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTL
HTDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIYYTKAP
EADYLEACVVSVLQIHVTQAPGDVLVFLTGQEEIEACCELLQERCRRLGSKISELIVLPI
YANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGME
SLIVTPCSRASANQRAGRAGRVAAGRCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLL
KSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKM
ILASEQYKCSEEVLTIAAMLSVNNAIFYRPKDKVVHADNARMNFVVPGGDHLMLLNVYSQ
WVESGYSTQWCFENFIQFRSMRRARDVREQLEGLMDRIEVELCSANGDNICIRKAVTAGY
FYHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIESGW
LLEVAPHYYKSKELEDSSSKKMPRKQGKAREELG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggagcagtgggtcagcgacaggctccatgacatcctgggcctgagtgac
agatacgtggcccagtttatgatcggcctggcgcagaaatcctctgccccacaggacttt
gtagcacgtctgcaacagaccggcaccattgacattgaccagagagtaactgcattcgct
ctcgagttatacaacaaggttccaaagaaacaggttgtcgaaaaaccatcaagagccatc
gagcgacaggtgatggagatggaacgaaagaacaagacctacactctgctggaggacagt
gacagcgatggagaggtgtccagagaaggagggaaggagaagaggagtcgagaaaaggac
cgaggaaagaagaggaagcacattaggaaaaaaagagatgaaagtcccgtgtcgagcgag
gaagacgggaagaagagcaaatcatttttacatgaggcaaagaaagcccagaaagatgac
gatgaggaagaagagtgggagaaggaggagagagaaaggctgcaggatttggaggagagg
gacgcttttgcagagcgagtgaagcagagggacaaagagaagacgaggcacatacttgag
cgaaatgacaaaaaggcgtacgaggaggcgcagaagagactgaagatggctgaagaagat
cagaagaaaatgttgcctgagctgcggaaatgctcacggcgtgaatacctggccaaacgt
gagcaggagaagctggaggacctggaggcagagattgtagatgaggagtaccttttctct
ggtgatagtctcactgagcaggagaggaaagacctggaatacaagaaacagatcagagac
ctggctcgcgactacaaaaaagctggcgcaaaggagaaagaagagaggaaaaaccgctac
ttcatgcccgaggagatacgtaataaaaatattcctcagagggacatggagttggagttt
gatgaggaccttaaagaaggtggaggtgagcaggggagatgggaggaggcacgggttgcc
acagccacactgcagttcggggccagagaggagcgagagcaacgtataaaggaggagaaa
gagaaataccagctagtgctcgaagaagacgagatgattaactttgtgagcagtgctatc
accatgaaaggaacgctctctgaaaaggataccgaaccggagctctctcaggctgaaaaa
cagaagcagtccatccaggaagtgagacacagcctgcccatatttccctacagaggtgac
ctcctcaccgccatcagagaccaccagatcctggttatcgagggagagaccggctctggc
aagacaacccagattcctcagtacctcatggaggatggttataccaaaggagggatgaag
gtggggtgtacccagcctcgcagagtagcagctatgtctgtcgcagccagagtggctcag
gaaatggcagtgaagctggggaatgaggtgggttacagtatccggtttgaggactgcacg
tcagagcgcaccgtgctcaagtacatgactgatggcatgttgttgagagagttccttacc
gagcccgacttggctagttatagcgtgatcatcattgatgaggctcacgagaggacattg
cacacagacatactgttcgggctgatcaaagacatcgcacgtttccggccggacctgaag
gtgctggttgctagtgctactctggacacagagcgtttctcctgtttcttcgatgacgct
cctgtattcaggatcccgggccgcaggtttcctgtcgacatctactacaccaaggcccct
gaggctgattacctggaggcgtgtgtggtatcggtactacagattcatgtgacccaggct
cctggagacgtcctcgtgttcctcacaggacaggaagagattgaggcgtgctgtgagctt
ctgcaggagaggtgtaggaggcttggttcaaagatctctgagcttattgtcctccccatc
tacgccaacctaccctcagacatgcaggctaagatttttaaccccacaccacctggagct
cgcaaggttgtggtagccacaaatatagcagaaacctctctcaccattgacggcatcatc
tatgtgattgaccctggcttctgcaaacagaagagctacaatgcccgaacagggatggag
tctctgattgttacaccatgctcacgggcctcagccaatcaacgggcaggccgagccggt
cgcgtcgctgcaggcagatgtttcaggctttatacagcctgggccttcaaacacgagatg
gaggaaaccacagttcctgaaatccagaggaccaacctgggcaatgtggtcctgctcctg
aagagtctgggcataaacgacctgatccattttgacttcatggacccgcctccacacgaa
accctggtgctggctcttgagcagctctacgccctgggtgcccttaaccaccttggagaa
ctcactaagctggggaggaggatggctgagctgcctgtggaccccatgctgagtaaaatg
atcttggcttctgaacagtataagtgctcagaggaggtgttaactatcgccgccatgctg
tcagtcaacaacgctatcttctacaggccaaaagacaaagtcgtgcatgcggacaatgcc
cgaatgaactttgtggtgccaggaggagaccatctgatgctcctcaatgtttactctcag
tgggtggagagtggttattccacacagtggtgttttgaaaactttatccagtttcgctcg
atgaggcgggcgcgtgacgtgagggagcagctggagggactgatggacagaatcgaggtg
gagttatgcagcgctaacggtgacaacatctgcatccgcaaggcagtcacagcaggttat
ttctaccacacggcccgtctcagtaaaggaggctacaaaaccgtgaagcaccagcagact
gtgtatgttcaccccaatagctcactgtttgaggaacagccacgctggctcatctaccat
gagctggttttcaccaccaaggagttcatgagacaggtgattgagatagaaagcggctgg
cttttagaggtggctcctcactactacaagagcaaagagctggaagacagcagcagtaag
aaaatgcctcgcaaacagggcaaagctcgggaggagctcggatga
DBGET
integrated database retrieval system
