Nguyenibacter sp. L1: QN315_00980
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Entry
QN315_00980 CDS
T09784
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ngu
Nguyenibacter sp. L1
Pathway
ngu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ngu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QN315_00980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngu03400
]
QN315_00980 (mfd)
Enzymes [BR:
ngu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QN315_00980 (mfd)
DNA repair and recombination proteins [BR:
ngu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QN315_00980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
AAA_16
UB2H
Cas3-like_C_2
SecA_DEAD
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WRH88252
LinkDB
All DBs
Position
complement(211818..215270)
Genome browser
AA seq
1150 aa
AA seq
DB search
MTTGATIWGVPDGFDAFLLARRAAEQDGPVLHVARDDAGMARIGDLLSFVAPNVEILRFP
AWDCLPYDRVSPNPAIVAERVATLTRLLEPAAGPRIVLTTVGGLVQRVAPRAAFRGQSIT
LAAGDSLDQPLLIELLVAAGYNRTDTVMEPGEFAARGGIFDIFPAGEPEPVRLDLFGDEI
ENIRRFDPASQRSSDRLDRFVMRPVADFTLDQASISRFRTGWRDLFGPAAAADPLYQHVS
DGRRHAGMEHWLPLFHDQMETLVDYLPGLAIILAHQAEEVLAARLEMIADHFEARRQPVR
EGEVPYRPLPPHLMYLDRKGWDGILAGHPVITFNPFARPDDAPGLDAGGRPGILFARGTG
AEGRENVFALLDAQVRQWAEVGRRAYVSAWTRGSRERIASLLREHGMRVRVVETWSRDHD
MPPGTVGLTIMGLERGFIADNMAFVSEQDLLGERIARPPRRRRKADQFIAEASEIAEGDL
VVHQDYGIGRYDGLETIGVGSAPHDCLRLIYDGNEKLFLPVENIELLSRFGSDQAGVALD
KLGGASWQNRKAKMKQRIRDMAGELIRTAALRALREAPALAPAEGLWDEFCARFPFVETE
DQSRAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGAQVAVVVPTTLLAR
QHFRTFSARFAGLPITVAQLSRMVTAKEAAAVRKGLTDGTINIVVGTHALLAKGVQFADL
ELLIIDEEQHFGVAHKEKLKALREDVHVLTLSATPLPRTLQLALTGVREMSLIATPPTDR
LAVRTFIMPFDSVVIREAIQRERFRGGQIFCVVPRIEDLDRMAARLHDIVPDARLVQAHG
RLTPTELERVMTEFGDGKYDILLSTNIVESGLDMPAVNTLIIHRADMFGLGQLYQLRGRV
GRGKQRGYAYLTWPQTHVLSAAAEKRLEVMQTLDTLGAGFTLASHDLDLRGAGNLLGDEQ
SGHIREVGIELYQQMLEDAVAELRVEKGKRKLQDRDWTPNIILGLPVLIPEGYVTDLPVR
LGLYRRIAALANDAEIEAMEAELVDRFGTPPDEVRNLLDVVTLKRLCREAGVERLEAGPK
GMVLQFRGNSFANPGGLVGWIATQKEANVRLRPDHKLALVRELTNAQRIRLAKDTVQALG
RLAAGQDKAA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgggggccacgatctggggcgtccccgacgggttcgacgccttcctgctggcg
cgccgcgccgccgaacaagacggccccgtcctgcatgtcgcgcgcgacgatgccggcatg
gcccgcatcggcgacctgctgtccttcgtcgccccgaatgtcgaaatcctgcgcttcccg
gcgtgggactgcctgccctatgaccgcgtctcgcccaatcccgccatcgtcgccgaacgc
gtcgccacgctgacgcgcctgctggaaccggcggccggcccgcgcatcgtgctcaccacg
gtcggcggcctggtccagcgcgtcgccccccgggccgccttccgcggccagtcgatcacg
ctggccgccggcgacagcctggaccagccattgctgatcgaactgctcgtcgccgccggc
tacaaccgcaccgacacggtaatggaacccggcgaattcgccgcccgcggcggcatcttc
gacattttcccggcgggcgagcccgaaccggtccgcctcgacctgttcggcgacgaaatt
gaaaatatccgccgcttcgatcccgccagccagcggtcctcggaccggctggatcgcttc
gtcatgcggccggtcgccgatttcacgctcgaccaggccagcatctcgcgcttccggacc
ggttggcgcgacctgttcggcccggccgccgccgccgatccgctctaccagcacgtctcg
gacggccgccgccacgccggcatggaacattggctgccactgttccacgatcagatggag
accctggtcgactacctgccgggcctggccatcatcctggcccaccaggccgaggaggtc
ctggccgccaggctggaaatgatcgccgatcatttcgaagcccgccgccagccggtgcgc
gagggcgaggtcccgtaccgcccgctgccgccgcacctgatgtatctggaccgcaagggc
tgggacggaatcctggccggccatccggtcatcaccttcaatcccttcgcccgccccgac
gacgccccgggcctcgatgccggcggccggccgggcatcctgttcgcccgcggcacgggc
gccgaggggcgcgagaacgtcttcgcgctgctcgacgcccaggtccggcaatgggccgag
gtcggacgccgcgcctacgtctccgcctggacccgcggctcgcgcgaacggatcgccagc
ctgctgcgcgaacacggcatgcgggtgcgggtggtcgaaacctggtcgcgtgaccacgac
atgccgcccggcacggtcgggctgaccatcatggggctggaacgcggcttcatcgccgac
aacatggccttcgtctccgagcaggacctgctgggcgaacggatcgcccgcccgccccgc
cgccgcaggaaggccgaccagttcatcgccgaagcctcggaaatcgccgagggcgacctg
gtggtccaccaggattacggcatcggccgctatgacgggctcgagacgatcggcgtcggc
agcgcgccgcacgactgcctgcgcctgatctatgacgggaacgaaaaactgttcctgccg
gtggaaaacatcgaattgctcagccgcttcggctccgaccaggccggggtcgcgctggac
aagctgggcggcgcctcgtggcagaaccgcaaggcgaagatgaagcagcgcatccgcgac
atggcgggtgaactgatccgcaccgccgccctgcgcgcgctgcgcgaagcccccgccctg
gccccggccgaagggctgtgggacgaattctgcgcccgcttccccttcgtcgagaccgag
gaccagtcccgcgcgatcgccgacgtgctggaggacatgggctcgggccggccgatggac
cggctggtctgcggcgatgtcggcttcggcaagaccgaggtcgcattgcgcgccgccttc
gtcgccgccctgtcgggggcgcaggtcgcggtggtggtgcccaccaccctgctggcgcgg
cagcatttccgcaccttctcggcccgtttcgcgggcctgccgatcacggtggcgcagctc
tcgcgcatggtcaccgccaaggaggccgccgccgtgcgcaagggcctgaccgacggcacg
atcaacatcgtggtcggcacccacgcgctgctggccaagggcgtccagttcgccgacctg
gaactgctgatcatcgacgaggaacagcatttcggcgtggcccacaaggagaagctgaag
gcgctgcgcgaggacgtgcacgtcctcaccctctcggccacgccgctgccccgcacgctc
cagctcgctctgaccggcgtgcgggaaatgagcctgatcgccaccccgcccaccgaccgg
ctggcggtgcgcaccttcatcatgcccttcgacagcgtcgtgatccgcgaggcgatccag
cgcgagcgcttccgcggcggacagatcttctgcgtcgtcccgcggatcgaggacctggac
cgcatggccgcgcgcctgcacgacatcgtgcccgacgcgcggctcgtccaggcccatggc
cgcctgacgccgaccgagctggaacgggtcatgaccgaattcggcgacggcaaatacgat
atcctgctctccaccaacatcgtggaaagcgggctggacatgccggcggtcaacacgctg
atcatccatcgcgccgacatgttcgggctgggccagctctatcagttgcgcggccgcgtc
gggcgcggcaagcagcgcggctatgcctacctgacctggccgcagacccatgtcctgtcc
gccgcggccgaaaaacggctggaagtcatgcagacgctggacacgctgggcgccggcttc
acgctcgcctcgcacgatctggacctgcgcggcgccggcaacctgctgggcgacgagcaa
tccggccatatccgcgaggtcgggatcgaactctaccagcagatgctcgaggacgcggtg
gccgaactgcgcgtcgagaagggcaagcgcaagctccaggaccgcgactggacgcccaac
atcatcctcggcctgccggtgctgatccccgagggctacgtcaccgacctgccggtccgg
ctgggcctgtatcgccgcatcgccgccctggccaacgatgccgagatcgaggcgatggag
gccgaactggtcgatcgcttcggcacgccgcccgacgaggtccgcaacctgctcgacgtc
gtcacgctcaagcgcctgtgccgcgaggccggcgtcgaacggctcgaagccgggcccaag
ggcatggtgctccagttccgcggcaacagcttcgccaatcccggcggactggtcggctgg
atcgcgacgcagaaggaagccaatgtccgactgcggcccgaccacaagctggcgctggtg
cgcgaactgacgaacgcccagcgcatccggctggccaaggacacggtccaggcgctcggc
cgcctggcggccgggcaggacaaggcggcctga
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