Nguyenibacter sp. L1: QN315_16225
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Entry
QN315_16225 CDS
T09784
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ngu
Nguyenibacter sp. L1
Pathway
ngu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ngu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QN315_16225 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ngu03021
]
QN315_16225 (rpoC)
03400 DNA repair and recombination proteins [BR:
ngu03400
]
QN315_16225 (rpoC)
Enzymes [BR:
ngu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QN315_16225 (rpoC)
Transcription machinery [BR:
ngu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QN315_16225 (rpoC)
DNA repair and recombination proteins [BR:
ngu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QN315_16225 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WRH87495
LinkDB
All DBs
Position
3607457..3611644
Genome browser
AA seq
1395 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKIQLASSEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMVDMTLKDLEKILYFESYVVLEPGTSPLKQFSLLTEDQYLDVMDEHGEEGIEVG
IGAEAIKKVLERIDCKADKERLRQELKETTSEAKRKKLVKRLKLIEAFADSDSRPEWMIM
DLIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETPEFLATPDRNEYDAEGRLTVTG
APSFATVGEVEYALSAGAIKLHDKITARFETLDADGKPVRQTVITTPGRMLIAQILPRHP
AIPFALINKQLTKKNVSDVIDAVYRHCGQKECVIFCDRMMGLGFRHAAKAGISFGKDDMI
IPAEKKMLVERTAAEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMMKEISRQE
VGKTTNSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYFT
STHGARKGLADTALKTANSGYLTRRLVDVAQDCIIVEDDCGTERGLTVRAVMDGGEIVSS
LSERILGRTTAADVLDPASGDVLLARDTLIEEAQAEKIEKAGVESVLIRSVLTCESRVGV
CGLCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSMVEASR
DGKVTINNRNVVHNSQNVPIVMSRNCEIVLTDEKGTERARYRVPYGARLLVDEGAAVTRG
QKMAEWDPYTLPIITEQSGTVEYLDLIDSITLVERMDEVTGLTSKVVVDYKQAAKGVDLR
PRLQLKDANGHVIKLANGNDARYFLSPDSLLSVENGAQVSAGDVLARIPREGSKTRDITG
GLPRVAELFEARRPKDHAIISETDGRVEFGKDYKAKRRIIVKNDETGEETDYLIPKGKHV
SVQEGDFVRVGDPLVDGPRVPHDILKVLGVEALSDYLVNEIQDVYRLQGVKINDKHIEVI
VRQMLQKVEILEPGDTTYLIGETVDRIEFETENTKRLNMGERPAAAMPVLQGITKASLQT
QSFISAASFQETTRVLTEAATAGKKDTLNGLKENVIVGRLIPAGTGSVMNKLRAIAAGQD
RQRLAQVRPAVSKAE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactcatgaagatcctcggccagaccggccaggccatgaccttcgaccagatc
aagatccagctcgcctcgtccgagcagatccggtcctggtcgtacggcgagatcaagaag
cccgagaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagttc
cgcggcatcatctgcgagaaatgcggcgtcgaggtgacgctggccaaggtccggcgcgag
cgcatgggccatatcgagctggccagcccggtcgcgcatatctggttcctgaagtcgctg
cccagccgcatcggcctgatggtcgacatgacgctgaaggatctggaaaagatcctctat
ttcgaaagctacgtggtgctcgagccgggcacctcgccgctcaagcagttcagcctgctg
accgaggaccagtatctcgacgtcatggacgaacatggcgaagaggggatcgaggtcggc
atcggcgccgaggcgatcaagaaggtcctcgagcgcatcgactgcaaggcggacaaggag
cgcctgcgccaggagctgaaggagacgacctccgaggccaagcgcaagaagctggtcaag
cgcctgaagctgatcgaggcgttcgccgacagcgattcgcgtcccgaatggatgatcatg
gacctgattccggtgatcccgccggaactgcgtccgctggtcccgctggatggcggccgc
ttcgcgacctccgacctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgcctc
aagcggctgatcgagctgcgcgcgcccgacatcatcgtgcgcaacgagaagcgcatgctg
caggaatcggtcgatgcgctgttcgataacggccgccgcggccgcgcgatcacgggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctgggcaagcgcgtcgattattccggccgttcggtcatcgtggtcgggccc
gagctgaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctactccaagctggaaaaatacggccacgccaccaccatcaaggccgcgaagcgg
atggtggagaaggaacgtcccgaggtgtgggacatcctcgaagaggtgatccgcgaacac
ccggtcatgctgaaccgcgcgccgaccctgcaccgcctgggcatccaggcgttcgagccg
gtgctgatcgagggcaaggccatccagttgcacccgctggtctgcaccgccttcaacgcg
gatttcgacggcgaccagatggccgtccacgtgccgctgagcctcgaggcgcagctcgaa
gcgcgcgtgctgatgatgtccaccaacaacatcctcagccccgccaacggcaagccgatc
atcgtgccgtcgcaggacatcgtcctgggcctgtattatctcagcctggaaacgccggaa
ttcctggcgacgcccgaccgcaacgaatatgacgccgaaggccgcctcacggtcaccggc
gccccgtccttcgcgacggtgggcgaggtcgagtacgccctgtccgccggcgcgatcaag
ctgcacgacaagatcaccgcccggttcgagacgctcgacgccgacggcaagccggtgcgc
cagaccgtgatcaccaccccgggccgcatgctgatcgcgcagatcctgccccgccatccg
gcgatcccgttcgcgctgatcaacaagcaattgaccaagaagaacgtctccgacgttatc
gacgcggtctatcgccattgcggccagaaggaatgcgtcatcttctgcgaccgcatgatg
ggcctgggcttccgccacgcggcgaaggccggcatctccttcggcaaggatgacatgatc
atcccggccgagaagaagatgctggtcgagcgcactgccgccgaggtgaaggagttcgag
cagcagtaccaggacggcctgatcaccgccggcgaacgctacaacaaggtggtcgacgcc
tggtcgcgctgcacggacgaggtgcaggccgcgatgatgaaggagatctcgcgccaggag
gtcggcaaaaccaccaactcggtgtggatgatgagccattccggcgcccgtgggtcgccg
gcgcagatgaagcagctcgccggcatgcgcggcctgatggccaagccgtcgggcgagatc
atcgagcagccgatcatcgccaacttcaaggaaggcctgtcggttctcgactacttcacc
tcgacccacggcgcccgcaagggcctggccgacacggcgctgaagaccgcgaactcgggc
tacctgacgcgccgcctggtcgacgtggcgcaggactgcatcatcgtcgaggacgattgc
ggcaccgaacgcggcctgaccgtccgcgccgtcatggatggcggcgaaatcgtctcctcg
ctgtccgagcggatcctgggccgtacgaccgccgccgacgtgctggaccccgcttcgggc
gacgtgctgctcgcgcgtgacacgctgatcgaggaagcgcaggccgagaagatcgagaag
gccggcgtggaaagcgtgctgatccgctcggtcctgacctgcgaaagccgggtcggcgtc
tgcggcctgtgctatgggcgcgacctggcgcgcggcacgccggtcaatatcggcgaggcc
gtgggcgtgatcgccgcccagtcgatcggcgagcccggcacccagttgaccatgcgcacc
ttccatatcggcggcgccgcccagcgtggcgcggaacagtcgatggtcgaggcgtcgcgt
gacggcaaggtgacgatcaacaaccgcaacgtcgtccataacagccagaacgtccccatc
gtgatgtcgcgcaactgcgagatcgtgctgacggacgagaaggggaccgaacgcgcccgc
taccgcgtgccttacggcgcccgcctgctggtcgacgagggcgcggcggtgacgcgcggt
cagaagatggccgagtgggatccgtacaccctgccgatcatcaccgagcagtccggcacg
gtcgagtatctggacctgatcgactccatcacgctggtcgagcgcatggacgaggtcacc
ggcctgacctcgaaggtcgtggtggactacaagcaggcggccaagggcgtggatctgcgt
ccgcgcctgcaactcaaggacgccaacggccacgtcatcaagctggcgaacggcaatgac
gcgcgctacttcctctcgcccgactcgctgctgtcggtcgagaacggcgcccaggtcagc
gcgggcgacgtgctggcgcgcatcccgcgcgaaggctccaagacccgcgacatcaccggc
ggtctgccgcgcgtggccgaactgttcgaggcccgtcgtccgaaggaccacgcgatcatc
tcggaaaccgacggccgcgtcgaattcggcaaggactacaaggccaagcgccgcatcatc
gtgaagaacgacgagaccggcgaagagaccgactacctgatcccgaagggcaagcacgtc
tcggtccaggaaggcgacttcgtccgcgtgggcgacccgctggtcgacggtccgcgcgtg
ccgcacgacatcctcaaggtgctgggcgtcgaggcgctgtcggactacctggtgaacgag
atccaggacgtctaccggctgcagggcgtgaagatcaacgacaagcatatcgaggtgatc
gtccgccagatgctccagaaggtcgagattctcgagcccggcgacacgacctacctgatc
ggcgagacggtggatcgcatcgagttcgagaccgagaacacgaagcgcctgaatatgggc
gagcgtccggcagcggccatgccggtgctgcagggcatcaccaaggcgtcgctgcagacc
cagtccttcatctcggccgcctccttccaggagacgacgcgcgtcctgaccgaggccgcg
accgccggcaagaaggacacgctgaacggcctgaaggagaacgtgatcgtcggtcgcctg
atcccggcgggcacgggcagcgtgatgaacaagctgcgcgccatcgccgccggccaggac
cgtcagcgcctggcgcaggtccgtcccgcggtctccaaggccgaataa
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