Nguyenibacter sp. L1: QN315_17270
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Entry
QN315_17270 CDS
T09784
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ngu
Nguyenibacter sp. L1
Pathway
ngu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN315_17270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngu03019
]
QN315_17270
Enzymes [BR:
ngu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QN315_17270
Messenger RNA biogenesis [BR:
ngu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QN315_17270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CHASE8
AAA_19
AAA_22
YbbR
Flavi_DEAD
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WRH87688
LinkDB
All DBs
Position
3828217..3829488
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AA seq
423 aa
AA seq
DB search
MTTFADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPI
LHRLLTHSRRAHPKGARALVLAPTRELASQIDESFKAYARHMRLSHAVIFGGVGQGRQVE
AMRRGVDVLVAAPGRLLDLMGQGHVDLAGLEVLVLDEADRMLDMGFVRDIRRIVAALPRE
RQTLLFSATMPKSIAELAHSLLRDPATVQVTPPSSTVDRIRQAVMFVDTEKKRDALRLLV
DSPKVERAVVFTLMKHEANKVAAFLNENGIVAEAIHGNKSQGARERAMSGFRSGAVKVLV
ATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRDI
EKAIGKKVPVVQEHPFHSDAAQNSTQKPPVLGGGGGRGRGGGGGGRHQARQGGGQRGGAR
RVA
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatttgccgatcttcagcttgccgagccgctgttgcgcgcgctgaacgaggaa
ggatacacgacgccgacgccgatccaggccggcgcgattccgcacctgctggccgggcgg
gacctgctgggcctggcgcagacgggcacgggcaagaccgcggccttcgcgctgccgatc
ctgcaccggctgctgacccattcgcgccgggcgcaccccaagggggcgcgggcgctggtg
ctggcgccgacgcgcgagctggcgtcgcagatcgatgagagtttcaaggcctatgcccgg
catatgcggctgagccatgccgtgatcttcggcggcgtggggcaggggcggcaggtcgag
gcgatgcggcgcggggtggacgtgctggtggccgcccccgggcgcctgctggacctgatg
ggccaggggcatgtcgacctggcggggctggaggtcctggtcctggacgaggcggaccgg
atgctggacatgggctttgtccgcgatatccgccggatcgtcgcggcactgccgcgcgag
cggcagacgctgctgttttcggccaccatgcccaagagcatcgccgagctggcgcatagc
ctgctgcgcgacccggcgacggtgcaggtcaccccgccgtcgagcacggtggaccggatc
cgccaggcggtgatgttcgtggacacggagaagaagcgcgacgcgctgcgcctgctggtg
gactcgccgaaggtggagcgggcggtcgtcttcacgctgatgaagcacgaggcgaacaag
gtcgcggcgttcctgaacgagaacgggatcgtggccgaggcgatccacggcaacaagtcg
cagggcgcgcgcgagcgggcgatgtcgggctttcgctccggcgcggtgaaggtgctggtg
gcgaccgatatcgcggcgcgcggcatcgatgtcgacgacgtgacgcacgtgttcaattac
gacctgccgaacgtgccggagagctatgtccaccggatcggccgtacggcgcgcgccggg
cgggacggctgggcggtgtcgctgtgcgatgccgagcagcgggcgtggctgcgcgatatc
gaaaaggcgatcggcaagaaggtcccggtggtgcaggagcatccgttccattccgacgcg
gcccagaattcgacgcagaagccgcccgtgctgggtggaggcggtgggcgcggccggggc
ggcggcggtggcgggcgccatcaggcacgccagggtggcggccagcgcggcggggcgcgc
cgggtggcgtga
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