Nocardiopsis gilva: CDO52_07840
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Entry
CDO52_07840 CDS
T05022
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ngv
Nocardiopsis gilva
Pathway
ngv03420
Nucleotide excision repair
ngv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CDO52_07840
03430 Mismatch repair
CDO52_07840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngv03400
]
CDO52_07840
Enzymes [BR:
ngv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDO52_07840
DNA repair and recombination proteins [BR:
ngv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDO52_07840
MMR (mismatch excision repair)
Other MMR factors
CDO52_07840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ASU82705
UniProt:
A0A223S3K7
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All DBs
Position
1672172..1675621
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AA seq
1149 aa
AA seq
DB search
MAHFPEINGETGPKDQEWDIESVDVTQELAEEAAAFPRRELTPAELARLLGQPEPTAEQA
AVISAPLGPSVVVAGAGSGKSETMAGRVVWLVANGHVRPEHVLGLTFTRKAAAELAERVR
KRLDQLRATEQVPAEVLDGDPMVSTYNSYAARLVGDHALREAIEPTARLISEGQAWQLAA
RIVADYDGPMDAITVTPGTVTGRVLELAGELADHLRTPDDVRGVGEWMAERAAALPKRLK
ETRDLLDTQRRREQLLPLVEQYTEAKAAREVMDYGDQVALAARIATRHPEVGMIERSRYR
VVLLDEYQDTSHAQLLLLRALFGDGHPVTAVGDPCQSIYGWRGASSGNLTGFSTDFPEAP
GRPAPVRRLATSFRNGERVLQVAKRVSEPLREEAEYVPVLYPGPARRGRGTVACGLFATE
TEEAAWIATTIEAALRQPDHLAPDGITWPEGEGAAAITHGDVAVLCRKRSQFPVLREALE
ERGIPVEVVGLGGLLTVPEVRDIVATLRVIHDANAGNELARLLTGPRWRMGPRDLVALGD
RAAELAKEVRRDLNGSAAAPDEVAEAEEAEELLRRTVLDVTAESGSLVDALDDLGPAERY
SETGYRRLTALAEELRGLRRLATQPLPDLITEIERVLGLDIEVGARAGRDPMAARADLDA
FVDAAVRFVGNSEDPSLGTFLAYLRAAEDAEKGLDPGERVGGSDTVKLMTVHAAKGLQWP
LVVVPGLSGGRYPLFPTKPKASGGWLTQEQQLPFPLRGDAAGLPRLDDVDKPGIVRFKEA
DRDRHRMEERRLAYVAVTRASFALLCTGHWWGRASASKRGPSPFLEEIQETCAAGAGRVA
HWAPPPGDHETNPQTAEVEPVAWPQTPEEYEGGAARRYREVAEGAELVARAAADGHAEGR
RWLETLERAEMPAAMRRRLDGWSRDTELLLAHREAEDRPEDGAIPVELPAHLSVSSLVSL
ARDPATLARQIRRPLPRPPAPHTRRGTAFHTWLEQRFGQQSLLVPDELPGAADETAVEVD
GDLAELQRRFEEGEWGGRTPLDVEVPFETIIGDRLIRGRMDAVFNDRDDGHYDVVDWKTG
RPPGNERERAAVAVQLAAYRIAWAELAGVPLADVRAAFHYVRAGETIRPADLLDADGLAA
LIEGLPVAD
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttggcgcactttcccgagatcaacggtgaaacggggccgaaagatcaggagtgggatatc
gagagcgtggacgtgacccaggaactggccgaagaggccgcggccttcccccgccgtgag
ctgacgcccgccgaactggcccggctgctggggcagcccgagccgacggccgagcaggcc
gcggtcatctcggctccgctcgggccgagcgtcgtggtggccggtgcgggctcaggcaaa
agcgagacgatggccgggcgggtggtctggctggtcgccaacggacacgtgcgacccgaa
cacgtcctcggcctgaccttcacccggaaggcagccgccgagctggccgaacgcgtccgc
aagcggctcgaccagctgcgcgccaccgagcaggtgcccgccgaagtcctcgacggcgat
ccgatggtgtccacgtacaactcctacgccgcccgcctggtcggcgaccacgcgctgcgc
gaggccatcgaacccaccgcgcggctcatcagcgagggccaggcgtggcagctcgctgcc
cgcatcgtggcggactacgacgggccgatggacgccatcaccgtcacccccggcaccgtc
accgggcgggtgctggaactggccggtgagttggccgaccacctgcgcaccccggacgac
gtgcgtggtgtcggcgaatggatggccgagcgcgccgcggcgctgcccaagcgcctcaag
gagacccgcgacctgctggacacccagcgtcggcgcgagcagctgctgccgctcgtcgag
cagtacaccgaggccaaggcggcgcgcgaggtgatggactacggcgaccaggtggcgctg
gcagcccgcatcgcgacccgccacccggaggtcgggatgatcgagcgcagccgctaccgg
gtggtgctgctcgacgagtaccaggacaccagccacgcccagctgctcctgctccgggcg
ctcttcggcgacggccacccggtcaccgccgtcggtgacccctgccagtcgatctacggg
tggcggggggccagctccggcaacctcaccggcttttccaccgacttccccgaggccccg
gggcggccggcgccggtgcgccgactcgccaccagcttccgcaacggcgagcgcgtgctg
caggtcgccaagcgggtctccgaacccctgcgtgaggaagccgagtacgtccccgtcctc
taccccggcccggcgcggcgcgggcgcggcacggtggcctgcgggctgttcgcgaccgag
accgaggaggccgcctggatcgccacgaccatcgaggcggcgctgcgccaacccgaccac
ctggcccccgatggcatcacctggcccgagggggaaggcgcggccgcgatcacgcacggc
gacgtcgcggtcctgtgccgcaagcgctcgcagttccccgttttgcgggaggcgctggag
gagcgcggtatccccgtggaggtcgtgggcctcggcggactcctgacggttcccgaggtg
cgcgacatcgtggccaccctccgcgtgatccatgacgccaacgcgggcaacgaactcgcc
cggctgctgaccgggccgcgttggcggatggggccgcgggatctcgtcgcgctcggcgac
cgtgccgcggagctcgccaaggaggtccgccgcgacctcaacggatcggccgcggcaccg
gatgaggtggctgaggcagaggaagcggaggagctgctgcggcgcaccgtcctcgacgtg
accgccgagagcggcagcctcgtcgacgccctcgacgatctcggcccggccgagcgctac
tcggagaccggctaccgacggctcaccgccctcgccgaggagctgcgcgggctgcgccgc
ctggccacccagcccctgcccgacctcatcaccgagatcgagcgggtgctgggcctggac
atcgaggtcggggcgcgggccggtcgcgacccgatggcggcccgcgccgacctcgacgcg
ttcgtcgacgcggccgtgcggttcgtcggcaacagcgaggacccctcactcggaacgttc
ctcgcctacctgcgcgccgcagaggacgcggagaaggggctggacccgggggagcgggtc
ggcggcagcgacaccgtcaagttgatgaccgtgcacgccgccaaggggctccagtggccg
ctggtcgtcgtcccggggctgtccgggggccgctacccgctgttcccgaccaagccgaag
gccagcggcgggtggctcacccaggagcagcagctgccgttcccgctgcgcggcgacgcc
gcgggcctgccgcgcctcgacgacgtcgacaagcccggcatcgtccggttcaaggaggcc
gaccgcgaccggcatcggatggaggagcggcggttggcctacgtcgccgtcacccgcgcg
tccttcgcgctgctgtgcaccggccactggtgggggcgcgccagcgcgagcaagcgtgga
ccttcgccgttcctggaggagatccaggagacgtgcgctgcgggggcgggccgcgtcgcg
cactgggctccgccgcccggtgaccacgagaccaacccgcagaccgccgaggtggaaccg
gtggcctggccgcagacgcccgaggagtacgagggcggcgcggcgcggcggtatcgcgag
gtggccgagggcgccgaactcgtggcccgggccgccgctgacggtcacgctgagggccgg
agatggctggagacgctggagcgcgccgagatgcccgcggcgatgcggcgccgactggac
gggtggagccgcgacaccgagctgctgctggcccaccgcgaggccgaggaccgccccgag
gacggtgcgatcccggtggagctcccggcccacctgtcggtgtcgtcgctggtgtcgttg
gcgcgcgaccccgcgacgctggcccggcagatccgccgccccctgccgcgtccccctgcc
ccgcacacccggcgcggcaccgccttccacacctggctggagcagcggttcggccagcag
agcctgctggtgccggacgagctgcccggtgcggccgacgagacggccgtcgaggtggac
ggcgacctcgcggagctgcaacgccgcttcgaggagggcgagtggggcgggcgcaccccg
ctggacgtggaggtgcccttcgagacgatcatcggtgaccgcctcatccgggggcgcatg
gacgcggtgttcaacgaccgcgacgacggccactacgacgtcgtggactggaagaccggc
cgaccgccgggcaacgagcgcgagcgcgcggcggtggccgtgcagttggcggcctatcgc
atcgcctgggcggagctcgcgggggttcccctggccgacgtccgcgcggccttccactac
gtgcgcgcgggggagacgatccgaccggccgacctgctcgacgccgatgggctggcggcc
ctgatcgaggggctgccggtggccgactga
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