Nocardiopsis gilva: CDO52_08810
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Entry
CDO52_08810 CDS
T05022
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ngv
Nocardiopsis gilva
Pathway
ngv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CDO52_08810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngv03400
]
CDO52_08810
Enzymes [BR:
ngv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CDO52_08810
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CDO52_08810
DNA repair and recombination proteins [BR:
ngv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CDO52_08810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
ASU82873
UniProt:
A0A223S420
LinkDB
All DBs
Position
1872001..1872885
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AA seq
294 aa
AA seq
DB search
MPELPEVESVRMGLDRWVAGRTVEAVDMLHPRSIRRHLSGSGDFAGRLAGCKITATARRG
KYMWLTLDSGEALLAHLGMSGQLLVQPPECADEKHLRVRMRFDDGGSELRFVDQRTFGHL
MVEPLVPDATGVEVPGAIRHIALDPLDPAFDGDVFAGVLRRRRTEIKRALLDQSLISGIG
NIYADEALWRSRLHWARATGGLQRRRVADLLEHVRGVLGEALAEGGTSFDGLYVNVNGES
GYFERGLKAYGRVGLPCERCQTPIRRDAFMNRSSFSCPKCQPRPRGARVSPASR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctccccgaagtcgagtcggtccggatggggctggaccggtgggtggccggt
cgcacggtcgaggccgtggacatgctgcatccccgttcgatccgtcggcacctgagcggc
tcgggggacttcgcggggcggttggccgggtgcaagatcaccgccaccgcgcggcgcggc
aagtacatgtggctgacgctggactccggcgaggcgcttctggcccacctggggatgagc
ggccagctgctggtgcagccgcccgagtgcgccgatgagaagcacctgcgggtgcggatg
cggttcgatgacggcggcagcgagttgcgcttcgtcgaccagcggacgttcggccacctg
atggtggagccgctcgtgcccgatgccacgggcgtcgaggtgcccggcgccatccggcac
atcgcgctggatccgctggacccggccttcgacggcgacgtgttcgccggtgtgctgcgc
cgtcggcgcaccgagatcaagcgggcgctgctcgaccagtcgctgatcagcgggatcggc
aacatctacgcggatgaggcgctgtggcggtcgcggctgcactgggcacgcgccacgggc
gggctccagcgccggcgggtggccgacctgctggagcacgtgcgcggggtgctgggtgag
gcgctggccgaagggggtacctcctttgacgggctctacgtcaacgtcaacggggagagc
ggctacttcgaacgcgggctgaaggcgtacggccgcgtggggctgccgtgcgagcgctgc
cagacgccgatccggcgggacgcgttcatgaaccggtcgtcgttcagctgcccgaagtgc
cagccccggccgcgcggcgcacgggtgtcgcccgcgtcccgctga
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