Nocardiopsis gilva: CDO52_10425
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Entry
CDO52_10425 CDS
T05022
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ngv
Nocardiopsis gilva
Pathway
ngv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDO52_10425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngv03019
]
CDO52_10425
03400 DNA repair and recombination proteins [BR:
ngv03400
]
CDO52_10425
Enzymes [BR:
ngv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CDO52_10425
Messenger RNA biogenesis [BR:
ngv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDO52_10425
DNA repair and recombination proteins [BR:
ngv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CDO52_10425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
DUF7573
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASU83142
UniProt:
A0A223S4T2
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All DBs
Position
2269454..2271610
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AA seq
718 aa
AA seq
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MVTSVPPESVLATSATDPAMREAAERHLRALAGPSARLREDQWRAIHALAAERRRALVVQ
RTGWGKSAVYFVATALRRAAGAGPTVIISPLLALMRNQIAAAERAGIRAHTINSSNMTAW
EQTYAEVAAGAVDVLLVSPERLNNPEFRDRVLPELAAGAGLVVIDEAHCVSDWGHDFRPD
YRRIRTLLRDLPAGIPVLATTATANERVTRDVAEQLEVGDGAGTLVLRGSLDRASLRLAV
VDLPDSTARWSWLAHHLPELPGSGIIYTLTVAAATETAAFLTECGRDVRAYTGQTDPEDR
QRAEDDLLNNRIEALVATSALGMGFDKPDLGFVIHLGAPQSPISYYQQVGRAGRGVDRAE
AILLPGREDQEIWRYFSSLAFPPEQTVRRTLDALAAADGPVSTPRLETEVDLGRSRLEQM
LKVLDVDGAVRRVRGGWVTTGQPWSYDAERYAAVTAAREREQQAMLDYIATDGCRMEFLR
RQLDDPEAAPCGRCDSCTGRRWSAEIDPERRAAAAAHLARPGTAVAPRKQWPTGMAALGV
SASGNIPAGQRAQEGRALARLTDIGWGTEMRRLLAADAPDDPVSDRVFQGIIDVLAAWPW
EQRPAGVVAMPSRTRPRMITDLAARLARVGRLAPVGTLDYTHPDGPGPRRHNSAQRLAQV
WNALTVGEPVAAALATLDGPVLLIDDYTDTGWTLTLASRLLREAGADAVLPLTLATRG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggttacctccgtgccccctgagagcgtgctcgcgacctccgccaccgaccccgccatg
cgcgaggcggccgagcgccacctgcgcgcgctcgccgggccgtccgcccgcctgcgcgag
gaccagtggcgggccatccacgcgctggccgccgagcggcggcgcgccctggtcgtccag
cgcaccgggtggggcaagtcggcggtgtacttcgtggccaccgcgctgcgccgggccgcg
ggcgccgggcccacggtcatcatctcgccgctgctcgccctcatgcgcaaccagatcgcc
gcggccgagcgcgccggaatccgcgcgcacaccatcaacagctccaacatgaccgcgtgg
gagcagacgtacgcggaggtcgccgccggcgcggtcgacgtcctcctggtcagtcccgag
cgcctgaacaaccccgagttccgcgaccgcgtcctccccgagctcgccgcgggtgccggg
ctcgtggtcatcgacgaggcccactgcgtctccgactgggggcacgacttccgccccgac
taccggcgcatccgcaccctgctgcgcgatctccccgcgggaatcccggtgctggccacc
accgccaccgccaacgagcgggtcacccgcgacgtcgccgagcagctggaggtcggcgac
ggggccgggacgcttgtcctgcgcgggtccctggaccgcgccagcctgcgcctggccgtc
gtcgatctgcccgactccaccgcgcgctggagctggctcgcccaccacctgcccgagctg
cccgggtcggggatcatctacacgctcaccgtcgccgccgccaccgagacggcggcgttc
ctcaccgagtgcgggcgcgacgtccgcgcctacaccgggcagaccgaccccgaggatcgc
cagcgggccgaggacgacctgttgaacaaccgcatcgaggcgctggtcgccaccagcgcg
ctggggatgggcttcgacaaacccgacctggggttcgtcatccacctcggcgccccgcag
tcgcccatctcctactaccagcaggtgggccgcgccgggcgcggcgtcgaccgggccgag
gccatcctgctgcccggccgcgaggaccaggagatctggcgctacttctcgagcctggcg
ttcccaccggagcagaccgtccgccggacgctcgacgcgctcgccgccgccgacggcccg
gtgtccaccccgcgtctggagaccgaggtcgacctggggcggagccgcctggagcagatg
ctcaaggtgctcgacgtcgacggcgcggtccgacgggtgcgcggcggctgggtgaccacc
ggccagccgtggagctatgacgccgaacgctacgccgcggtgaccgcggcgcgtgagcgt
gaacagcaggccatgctcgactacatcgccaccgacggctgccgcatggagttcctccgc
cgccagctcgacgacccggaggccgcgccgtgcgggcgctgcgactcctgcaccggacgc
cgctggtccgccgagatcgaccccgagcggcgcgccgccgcggccgcgcacctggcccgc
cccggcaccgccgtcgcgccgcgcaagcagtggcccaccgggatggcggcgctgggcgtc
tccgcctccggcaacatccccgccggacagcgcgctcaggagggccgcgccctggcccgc
ctcaccgacatcggctggggcaccgagatgcggcgtctcctcgccgccgacgctccagac
gaccccgtgagcgaccgcgtcttccaggggatcatcgacgtcctcgcggcctggccatgg
gaacagcgcccggccggggtcgtcgcgatgccctcacgcacccgcccccggatgatcacc
gacctggccgcgcgcctggcccgggtcggccgcctcgcaccggtgggcacgctcgactac
acgcaccccgacggccccgggccgcgccgccacaacagcgcccagcggctcgcccaggtg
tggaacgcgctgacggtcggcgaaccggtcgccgcggccctggccaccctggatggcccg
gtcctgctgatcgacgactacaccgacaccggctggaccctcaccttggcttctcgcctg
ctgcgcgaggcgggagccgacgccgtccttccgctcaccctggccacgcgagggtga
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