Nocardiopsis gilva: CDO52_11505
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Entry
CDO52_11505 CDS
T05022
Name
(GenBank) endonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ngv
Nocardiopsis gilva
Pathway
ngv03030
DNA replication
ngv03430
Mismatch repair
ngv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDO52_11505
03430 Mismatch repair
CDO52_11505
03440 Homologous recombination
CDO52_11505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngv03032
]
CDO52_11505
03400 DNA repair and recombination proteins [BR:
ngv03400
]
CDO52_11505
Enzymes [BR:
ngv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CDO52_11505
DNA replication proteins [BR:
ngv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CDO52_11505
DNA repair and recombination proteins [BR:
ngv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CDO52_11505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
GIY-YIG
DUF7508
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
ASU83320
UniProt:
A0A223S5A2
LinkDB
All DBs
Position
complement(2520470..2522200)
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AA seq
576 aa
AA seq
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MADQRLSLPGAHVQGTIDDVGTLLAHTTFVIVDLETTGSRSDGAGITEIGAVKVRGGEVL
GEFATLVNPRMPIPPHITLLTGITQAMVATAPDLDAALPAFLEFAALDGDATALVAHNAP
FDVGFLKAACGAQGHDWPHPTVVDTLPLARRLVTRDEVRNHKLGTLAGFFGAAEQPTHRA
LDDARATVGVLHGLLERLGSHEIDTLEELRHFRTPRTSAQRRKRHLADDVPEAPGVYVFT
DAKGDTLYVGKSSNLRRRVRSYFTAAETRGRIREMISLVEGVTPIVCATSLEAEVRELRL
IAERKPPYNRRSRNPGRAAWLKLTRESYPRLSVVRAVRDDDAPYIGPFRSSREAELAREA
LHHAIPLRQCTHRFSPSRPISACVLAQLGRCGAPCDGSESPQEYAAHAAAAATAMTDDAT
PVVEALSGHIARLATDLRYEEAALFRDRRAAFVAGAARSQRLAALAAIPQLVAAQPTGTA
WEVHVVRYGRLAGSGMMRRGADPHAFVEALVATAETVFPGPGPSPRATPGEMECVLRWLG
SPGIRLIDAASPWTCPVNGAEKHHELTDWQRDSAYD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaccagcggctttccctacccggcgcacacgtccaaggcaccatcgacgacgtg
ggcaccctcctcgcgcacacgaccttcgtgatcgtcgacctggagaccaccggctcccgc
tccgacggcgccggaatcaccgagatcggcgccgtgaaggtgcgcggcggcgaggtgctc
ggcgagttcgccaccctggtcaacccccgcatgccgatcccgccgcacatcaccctgctg
accggtatcacccaggccatggtcgccaccgccccggacctggacgcggcactgcccgcc
ttcctcgaattcgccgcactggacggcgacgccaccgcgctcgtcgcgcacaacgccccg
ttcgacgtcgggttcctcaaggccgcgtgcggcgcccagggccacgactggccccatccg
accgtcgtcgacaccctgcccctcgcccgccgactggtcacccgcgacgaggtgcgcaac
cacaagctcggtacgctcgccgggttcttcggcgccgccgagcagccgacgcaccgcgcc
ctcgacgacgcccgcgccaccgtcggcgtcctccacgggctcctggagcgcctcggctcc
cacgagatcgacaccctggaggagctgcggcacttccgcaccccgcgcaccagcgcccag
cggcgcaagcgccacctcgccgacgacgtccccgaggcaccgggcgtgtacgtcttcacc
gacgccaagggcgacacgctctacgtcggcaagagctcgaacctgcggcggcgcgtccgc
tcctacttcaccgccgccgagacgcgcgggcgcatccgggagatgatctccctcgtcgaa
ggggtcacccccatcgtctgcgcgacctcgctggaggcggaggtccgcgagctccggctc
atcgccgaacgcaagccgccctacaaccgccgctcccgcaaccccgggcgggccgcctgg
ctcaagctgacgcgggagtcctacccgcggctgtcggtcgtgcgggcggtccgcgacgac
gacgcgccctacatcggtcccttccgctcctcccgcgaggccgagctggcccgcgaggcg
ctgcaccacgccatccccctgcggcagtgcacccaccgcttctccccgtcccggccgatc
agcgcctgcgtgctggcccagctgggacgctgcggtgcgccgtgcgacgggagcgaatcc
ccgcaggagtacgccgcgcacgccgccgctgcggcgaccgccatgaccgacgacgccacg
cccgtcgtcgaggccctgagcgggcacatcgcccgcctcgccactgatctccgctacgag
gaggccgcgctgttccgcgaccggcgggccgcgttcgtggcgggggcggcgcgcagccag
cgcctcgccgccctggccgccataccccagctggtggccgcgcagccgacgggaacggcg
tgggaggtgcacgttgtcaggtacgggcggctcgccggaagcggcatgatgcggcgcggg
gccgacccgcacgccttcgtcgaggcgctcgtcgccaccgccgagaccgtgttccccggc
cccggcccgagcccgcgggcgacccccggcgagatggagtgcgtgctgcgctggctcggc
tcacccggcatccggctgatcgacgcggcctccccctggacatgcccggtcaatggtgcc
gaaaagcaccatgagctgacagactggcagcgcgacagcgcctacgactga
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