Nocardiopsis gilva: CDO52_12560
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Entry
CDO52_12560 CDS
T05022
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ngv
Nocardiopsis gilva
Pathway
ngv03030
DNA replication
ngv03410
Base excision repair
ngv03420
Nucleotide excision repair
ngv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDO52_12560
03410 Base excision repair
CDO52_12560
03420 Nucleotide excision repair
CDO52_12560
03440 Homologous recombination
CDO52_12560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ngv03032
]
CDO52_12560
03400 DNA repair and recombination proteins [BR:
ngv03400
]
CDO52_12560
Enzymes [BR:
ngv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CDO52_12560
DNA replication proteins [BR:
ngv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CDO52_12560
DNA repair and recombination proteins [BR:
ngv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CDO52_12560
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDO52_12560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
DNA_pol_lambd_f
HHH_5
HHH
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ASU83505
UniProt:
A0A223S5W7
LinkDB
All DBs
Position
2765922..2768693
Genome browser
AA seq
923 aa
AA seq
DB search
MVKTQQTPDQNSPSPAAGGEAAGRRRLLLLDGHSMAFRAFFALPVEKFATSTGQSTNAVY
GFTSMLIKLLRDEQPTHIAVAWDLSGPTFRHEVYEEYKDGRAETPQEFPSQVELIQELLR
MMGVTSVSATGFEADDVIATLAQRGGAEGMEVLIASGDRDAFQLVTDGCTVLYPGKSLSE
LTRMTPERIEEKYGVPPGRYRDLAALVGEKADNLPGVPGVGPKTAAKWITKYGSLDELVA
HADEVTGKAGQNFRDHLDDVLRNQRLNELATDVEVGAPVTELTMREADPSSINSLFDALE
FASTLRDRLFAVVGADAEQGEDESENNAEDFSVDLTVLGTGEVGAWLRGHAFDGKRVGLA
LSGEWGRGTGSISGLAIAAAGGAAAHIDPTALDADDERALAAWLADPAHPKAVHDAKGPM
LAMAAHGWELGGLTSDTALAAYLVQPGQRKVDLVDLCRKYLNRELSEHTGGGEQLTLDVT
GEGDAADTARRDLALRARATLDLAVGLDSDLRKRGADRLLADLELPLVRVLAAMERTGIA
VDRAYLDGLEEEFAAAVRQAVAEAHRVVGHEFNLGSPKQLQQVLFTELELPKTKRIKTGY
TTDADALAWLATQTDHELPAILLRHRDQTRLRTTVEGLIKTIAEDGRIHTTFNQTVAATG
RLSSTDPNLQNIPVRTDAGRRIRRAFVVGEGYEDLLTADYSQIELRIMAHLSEDAALIEA
FQTGHDFHAEIAARVFKVGVDEVDGEARARIKAMNYGLAYGLSAYGLSSQLGITPDEARG
LMDDYFAQFGGVRAYLHSVVEQARRDGYTETMLGRRRYLPDLTSDNRQRREMAERMAFNA
PIQGSAADIIKVAMLDVDAALREGGFTSRMLLQVHDELVLEVTSAELADVRKLVSEKMAN
AYALRVPLAVSVGVGRDWHDAAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
gtggtgaagactcaacagacccccgatcagaacagtccctccccggccgccgggggtgag
gccgcgggccgtcggcgcctactgctgctggacggccactccatggccttccgcgccttc
ttcgcgctgcccgtggagaagttcgcgacgagcaccggccagtcgaccaacgcggtctac
ggcttcacctcgatgctgatcaagctgctgcgcgacgagcaacccacgcacatcgcggtg
gcctgggacctgtccggtccgacgttccggcacgaggtgtacgaggagtataaggacggc
cgcgccgaaaccccgcaggagttcccctcccaggtggagctgatccaggagctgctgcgg
atgatgggcgtcaccagcgtctcagccacgggcttcgaggccgacgatgtcatcgcgacc
ctcgcccagcggggcggcgccgagggtatggaggtgctcatcgcctccggcgaccgcgac
gcgttccagctggtcaccgacggctgcacggtgctctacccgggcaagagcctgtcggag
ctgacccggatgaccccggagcggatcgaggagaagtacggcgtgccgccgggccgctac
cgcgacctcgccgcgctggtgggggagaaggccgacaacctccccggtgtcccgggcgtc
ggtcccaagaccgccgccaagtggatcaccaagtacggctccctggacgaactggtcgcg
cacgccgacgaggtcaccggcaaggccgggcagaacttccgcgaccacctcgacgacgtc
ctgcgcaaccagcggctcaacgagctcgccaccgacgtcgaggtcggcgccccggtcacc
gagctcaccatgcgggaggccgacccctcctccatcaactccctgttcgacgccctggag
ttcgcctccaccctgcgcgaccgcctgttcgccgtggtgggggccgacgccgagcagggt
gaagacgagtccgagaacaacgccgaggacttctccgtcgacctgacggtcctgggcacc
ggcgaggtcggcgcctggctgcgcggccacgccttcgatggcaagcgtgtcggcctggcg
ctgtccggggagtgggggcgcggtaccgggtcgatcagcggcctggcgatcgccgccgcc
ggcggagccgccgcccacatcgaccccacggccctggacgccgacgacgagcgggcgctg
gccgcctggctggccgaccccgcccaccccaaggcggtgcacgacgccaagggccccatg
ctcgcgatggccgcccacggctgggagctcggcggcctcaccagcgacaccgcgctcgcc
gcctacctggtgcagcccggccagcgcaaggtcgacctcgtcgacctgtgccgcaagtac
ctcaaccgcgagctcagcgaacacaccggcggcggcgagcagctcaccctcgacgtcacc
ggggagggcgacgccgccgacaccgcacggcgcgatctcgccctgcgtgcccgcgccacc
ctcgacctggccgtgggcctcgactccgatctgcgcaagcgcggcgccgaccgcctcctc
gccgacctggagctgcccctggtgcgggtcctggccgccatggagcgcaccggcatcgcg
gtcgaccgcgcctacctcgacggcctggaggaggagttcgcggccgcggtgcgccaggcg
gtggccgaggcccaccgtgtggtcggccacgagttcaacctcggctcgcccaagcagctg
cagcaggtgctgttcaccgagctggaactgcccaagaccaagcgcatcaagaccggctac
accaccgacgccgacgcgctggcctggctggccacccagaccgaccacgaactcccggcg
atcctgctccgccaccgcgaccagacccggctgcggaccacggtcgagggcctgatcaag
acgatcgccgaggacggccgcatccacaccaccttcaaccagacggtggcggccaccggg
cggctcagctccaccgaccccaacctgcagaacattcccgtgcgcaccgacgcggggcgg
cgcatccgccgcgcgttcgtcgtcggggaggggtacgaggacctgctgaccgccgactac
agccagatcgagctgcgcatcatggcgcacctgtcggaggacgccgcgctcatcgaggcc
ttccagaccggccacgacttccacgccgagatcgccgcccgcgtgttcaaggtcggcgtc
gacgaggtcgacggcgaggcccgcgcccggatcaaggcgatgaactacggcctggcctac
gggctgagcgcctatggcctctcctcccagctggggatcacgcccgacgaggcgcgcggc
ctcatggacgactacttcgcgcagttcggcggggtccgcgcctacctccactcggtggtc
gagcaggcgcgccgcgacggctacaccgagacgatgctcggccgccgccgctacctgccg
gacctgaccagcgacaaccgccagcgccgggagatggccgagcggatggcgttcaacgcc
cccatccaggggtcagccgccgacatcatcaaggtggcgatgctcgacgtggacgccgcg
ctgcgggagggcgggttcacgtcgcggatgctgctgcaggtgcacgacgaactcgttctg
gaagtgacttcggccgagttggcggatgtccgaaaactggtatcggaaaagatggcgaac
gcctatgctctccgtgtgccgctggccgtgtcggtcggcgtcggccgcgactggcacgac
gccgcccactag
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