Nocardiopsis gilva: CDO52_13375
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Entry
CDO52_13375 CDS
T05022
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ngv
Nocardiopsis gilva
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ngv03016
]
CDO52_13375
Enzymes [BR:
ngv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CDO52_13375
Transfer RNA biogenesis [BR:
ngv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CDO52_13375
Prokaryotic type
tRNA splicing ligases
CDO52_13375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASU86196
UniProt:
A0A223SDN5
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All DBs
Position
2909484..2910671
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AA seq
395 aa
AA seq
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MPYTEAPGARVPIRMWADPQTVEAAAMDQLRNVTRMPWVHGLAVMPDVHYGKGATVGSVI
AMRDAVSPAAVGVDIGCGMTAVETSLTAEDLPDDLHRLRSDLEKSIPVGFQMHKTPVNPH
RIHGLKTGEWSKFWDRFDDLAPAVRDRRQRAENQLGTLGGGNHFLEVCLDDEGTVWVVLH
SGSRNIGKELAEYHIEKARKLPHNQDLPDRDLAVFVADTPEMDAYRRDLFWAQEYARRNR
DVMMGLACDVMRKAFPRVRFEQWISCHHNYVAEENYDGVDVLVTRKGAIRAGQGDLGIIP
GSMATGTYIVRGLGNPASFNSASHGAGRRMSRNKAKKTFTRADLFEQTKGVECRKDTGVL
DEIPGAYKDLESVIDAQTDLVEVVAHLRQVICVKG
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgccgtacaccgaagctccgggtgcgcgtgttccgatccggatgtgggccgacccacag
acggtcgaggccgcggccatggaccagctccgcaacgtcacgcgcatgccgtgggtgcac
ggactggccgtgatgccggacgtccactacgggaagggcgccaccgtcggctcggtcatc
gccatgcgcgacgcggtgtccccggccgccgtcggcgtcgacatcggctgcggcatgacc
gccgtcgagacgtcgctgacggccgaggacctccccgacgacctgcaccgcctgcgctcg
gacctggagaagtccatcccggtcgggttccagatgcacaagaccccggtgaacccgcac
cgcatccacgggctcaagaccggtgagtggtccaagttctgggaccgcttcgacgacctc
gcccccgctgtgcgggaccggcgccagcgcgccgagaaccagttgggcacgctgggcggc
ggcaaccacttcctcgaagtctgcctggacgacgagggcacggtgtgggtcgtgctgcac
tccggatcccgcaacatcggcaaggagctcgccgagtaccacatcgagaaggcccgcaag
ctgccgcacaaccaggacctgcccgaccgcgacctcgcggtgttcgtcgccgacaccccg
gagatggacgcctaccgccgcgacctgttctgggcccaggagtacgcgcgccgcaaccgc
gacgtcatgatgggcctggcctgcgacgtcatgcgcaaggcgttcccgcgggtgcgcttc
gagcagtggatctcctgccaccacaactacgtggccgaggagaactacgacggtgtcgat
gtactggtcacccgcaagggcgcgatccgggccggacagggggatttggggatcatcccc
ggttccatggcgaccggcacctacatcgtgcgcggcctgggcaacccggcctcgttcaac
tccgcctcgcacggcgccggccgccggatgagccggaacaaggccaagaagaccttcacc
cgcgccgacctgttcgagcagaccaagggcgtggagtgccgcaaggacaccggcgtgctc
gacgagatccccggcgcgtacaaggatctggagtcggtgatcgacgcccagaccgacctc
gtcgaggtcgtcgcccacctgcgccaggtcatctgcgtgaagggctga
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