Nocardiopsis gilva: CDO52_15705
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Entry
CDO52_15705 CDS
T05022
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ngv
Nocardiopsis gilva
Pathway
ngv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDO52_15705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngv03019
]
CDO52_15705
03009 Ribosome biogenesis [BR:
ngv03009
]
CDO52_15705
Enzymes [BR:
ngv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDO52_15705
Messenger RNA biogenesis [BR:
ngv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDO52_15705
Ribosome biogenesis [BR:
ngv03009
]
Prokaryotic type
rRNA helicases
CDO52_15705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASU84041
UniProt:
A0A223S7F0
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All DBs
Position
complement(3455488..3457221)
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AA seq
577 aa
AA seq
DB search
MALVPTDMSNGFADLPLRPELLDAIAGLGYEQPTPIQREAIPHLVEGSDLLGQAATGTGK
TAAFALPVLQRLRADRDRSVPVALILVPTRELAVQVSEAVDSYGRSLGARVLPVYGGTPI
GRQLRSLERGVDVVVATPGRALDHLRRGTLPLDALEMVILDEADEMLDMGFAEDIEAILE
ETPPNCQTVLFSATMPARIDAMARRHLSDPVRIQIAREEQAPGEQPRVRQAAYVVPRGYR
SAAMGRLLDAERPAAAIVFCRTREEVDQLTSAMNERGHRAEALHGGMSQEQRDRVMGRLR
AGSANLLVATDVAARGLDIDQLTHVINYSVPSAPESYVHRVGRVGRAGREGVAVTLMEPR
EHRALKNIRRTTGYTIPVEDVPTVADMRARRLELTRTTLLENLSEDGGLEEFRAMLESLG
DEYDAEAVALAAMKLAHEALHPTSDERDIPAVSLKPDPDKRGRRGTDRQAADRRGGARGE
RRPRGGSAGVTRLFVGAGRSAKVRPQDLVGAIAGEAGLSGRDIGAIEIADRFSLVEVPAA
DADRVIAAMKGTTIKGRKTVIRRDARRPGSAGERVGR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgtccccaccgacatgtcgaacggcttcgccgacctgccgctacggccggag
ctgctcgacgctatcgccggactggggtacgagcagcccactcccatccagcgtgaagcg
atcccgcaccttgtcgagggcagcgatctgctcggccaggccgccactggcaccggcaag
accgccgcattcgccctcccggtactccagcgcctgcgcgccgaccgcgaccggagcgtg
cccgtcgcactgatcctggtcccgacgcgcgaactcgccgtccaggtctccgaggcagtc
gacagctacggccgctccctgggcgcgcgggtgctccccgtctacggcggcacgccgatc
ggacggcagctccggagccttgagcgcggcgtcgacgtcgtggttgccactccgggccgc
gcactggaccacctgcgccgtggcacacttccgctggacgcccttgagatggtcatcctc
gacgaggccgacgagatgctcgacatggggttcgccgaggacatcgaggccatcctggag
gagacgccgccgaactgccagaccgtgctgttctcggcgaccatgccggcgcgcatcgac
gcgatggctcgccgacacctgagcgaccccgtacggatccagatcgctcgtgaggagcag
gccccgggcgagcagccaagggtgcgtcaggccgcctacgtcgttccgcgtggatacaga
tcggcggcgatggggcgtctgctggacgccgagcggcccgccgccgcgatcgtcttctgc
cgcacccgcgaagaggtcgaccagctcaccagcgccatgaacgagcggggacaccgtgcc
gaggccctgcacggcggcatgagccaggagcagcgcgaccgcgttatggggcggctgcgc
gccggatcggccaatctgctggtggccaccgacgtcgcggcgcgtgggctcgacatcgac
cagctcacgcacgtgatcaactacagcgtcccctcggcaccggagtcctatgtgcaccgc
gtgggccgggtggggcgggccggtcgtgagggtgtggcggtcacgctgatggagcctcgc
gagcaccgcgcgctcaagaacatccggcggacgaccggctacacgatccctgtggaggac
gtgccgaccgttgcggacatgcgggcccggcgcctggaactgacccgcaccactctgttg
gagaacctgagcgaggacggtggactggaggagttccgtgccatgctcgaatcgctcggt
gatgagtacgacgccgaggccgtcgccctggcggcgatgaagctcgcccacgaggcactc
catccgacgagtgacgagcgggacatccccgcggtctccctcaagccggatcccgacaag
cgcggccgacgcggcacggaccggcaggcggcggaccggcgcggtggcgcccgcggcgag
cggcgtccccgtggcgggtccgcgggcgtgacccgcctgttcgtcggagccgggcgcagc
gcgaaggtccgaccccaggacctggtcggggcgatcgccggtgaggcggggcttagcgga
cgcgacatcggagcgatcgagatcgcggaccgattctcgctggtggaggtcccggcggcc
gacgccgaccgggtcatcgccgcgatgaagggcaccaccatcaaggggcgcaagaccgtg
atccgccgcgatgcccgtcggccgggatccgcgggagagcgcgtcggccgctag
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