Nocardiopsis gilva: CDO52_21995
Help
Entry
CDO52_21995 CDS
T05022
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ngv
Nocardiopsis gilva
Brite
KEGG Orthology (KO) [BR:
ngv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ngv03019
]
CDO52_21995
Enzymes [BR:
ngv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CDO52_21995
Messenger RNA biogenesis [BR:
ngv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CDO52_21995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
NACHT
nSTAND3
T2SSE
AAA_16
ABC_tran
AAA_30
PhoH
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ASU85109
UniProt:
A0A223SAN0
LinkDB
All DBs
Position
complement(4929538..4933476)
Genome browser
AA seq
1312 aa
AA seq
DB search
MRTSPARSPRSRNSTGSPAPYPELRARLGQLMPADRHRLRRRIDGLHKVSDERKRDAIAA
ELATEIDLAELRLEQRKAAVPQVSYPTALPVSQKKDDIAEAIRDHQVVIVAGETGSGKTT
QLPKICLELGRGVQGSIGHTQPRRIAARTVAERIAEELDSPLGQTVGYKVRFTDHSGDDT
LVRVMTDGILLAEIQQDRMLRRYDTLIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIIT
SATIDPERFSRHFDSAPIVEVSGRTYPVEVRYRPIAEEAEDTERDQVQAICDAVEELGRE
APGDVLVFLSGEREIRDTADALEKLKLRDTEILPLYARLSSAEQHRVFTPHRGRRIVLAT
NVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEPISQASANQRKGRCGRVSEGVC
IRLYSEEDFCSRPEFTDPEILRTNLASVILQMASLGLGDIAAFPFVEGPDHRQIKDGVHL
LQELGALDPQATDARKRLTQLGRKLAQLPVDPRLGRMVLEAERNGCVREVMIITAALSIQ
DPRERPADKQQAAQEKHARFTDKESDFLAYLNLWSYLQEQQRALSGNQFRKLCRTEFLNY
LRVREWQDIYSQLKQVAKGMGITLNSARPDPRQVHISLLSGLLSHIGLKDPEKHEYLGGR
GARFAIFPGSSLFKKQPRFVMSAELVETSRLWGRMNARIEPEWAEELGGHIVKRTYSEPH
WEKNRGAVMAYERVTLYGVPIVVQRKVGYGKIDPELSRELFIRHALVEGDWETHHKFFHE
NRRLLEEVEDLEHRARRRDILVDDETLFQFYDERIGAEVVSAAHFDSWWKRARRTDPDLL
GFEKSMLINEEADEVREEDYPDTWRQGSLTFPLSYQFEPGADADGVTAHIPLKVLNQVEE
AGFDWQIPGLRRELVTALIRSLPKPLRRNFVPVPDHAEAVLGRLTPYTEPLVEALSRELG
RVSGERIGADDWQLDKVPDHLRITFRAVDGKGRKLAEDKDLAALRAQLKPRLQKAISAEA
KGIEKTGLTSWDFGPLSRTFERKSAGPAVRGYPALVDEGDSVAIRIFDTEAEQRAAMWAG
VRRLLLLQIPSPAAVVQRGLDNTAKLALSHNPHGGINALFDDCLRCAVDALMAEAGGPVW
DGDAFHRLREHVRAELGDTLAEVVAATARVLGKAHEVQRKLKGSTSLAVLPSLNDIQGQL
AGLIHSGFVTETGRGRLADLHRYLRAVEYRLAKLSENPRRDQVNMAKVEQMRQAWEKLLA
GLGPGRADESGVREIRWMLEELRVSFFAQELGTAHPVSEKRILKAIEAAKVG
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgagaacctcgccagccagatccccgcgttcccggaattccacgggttcccccgcgccc
tacccggaactccgcgcccgcctcggccagctgatgcccgccgaccgccatcggctgcgc
cgccgtatcgacggcctgcacaaggtgagcgacgaacgcaagcgcgacgccatcgccgcc
gaactggccaccgagatcgacctggcggaactgcgcctggagcagcgcaaggccgccgtc
ccccaggtcagctaccccacagctctcccggtcagccagaagaaggacgacatcgccgag
gcgatccgcgaccaccaggtcgtcatcgtcgccggtgagaccggttccgggaagaccacc
cagctgcccaagatctgcctggaactgggccgcggcgtgcagggcagcatcggccacacc
cagccgcggcgcatcgccgcgcgcaccgtggccgagcgcatcgccgaggagctcgactcc
cccctgggccagaccgtcgggtacaaggtccggttcaccgaccactccggcgacgacacc
ctcgtacgggtcatgaccgacggcatcctgctggccgagatccagcaggaccggatgctg
cgccgctacgacaccctcatcatcgacgaggcccacgagcgcagcctcaacatcgacttc
ctgctcggctacctcaagcagctgctgccgcgccgccccgacctcaaggtcatcatcacc
tcggcgaccatcgaccccgagcggttctcccggcacttcgacagcgcgccgatcgtcgag
gtctccggccggacctaccccgtcgaggtgcgctaccggcccatcgccgaggaagccgag
gacaccgagcgcgaccaggtccaggccatctgcgacgccgtcgaggagctgggccgcgag
gctcccggcgacgtcctggtcttcctcagcggcgagcgggagatccgcgacaccgccgac
gctctggagaagctcaagctccgcgacaccgagatcctcccgctgtacgcccgcctgtcc
tcggccgagcagcaccgcgtgttcaccccgcaccgggggcggcgcatcgtgctggccacc
aacgtcgccgagacgtcgctgaccgtgcccggcatcaagtacgtcatcgacccgggcacg
gcccgcatctcccgctacagccaccgcaccaaggtgcagcggctgcccatcgagcccatc
tcccaggcctcggccaaccagcgcaagggccgctgcggccgcgtgtccgaaggcgtctgc
atccggctgtactcggaggaggacttctgctcccgtcccgagttcaccgaccccgagatc
ctgcgcaccaacctcgcctcggtcatcctgcagatggcctcgctggggctgggcgacatc
gccgccttccccttcgtcgagggccccgaccaccggcagatcaaggacggcgtccatctg
ctccaggagctgggcgcactggacccgcaggccaccgacgcccgcaagcgcctcacgcag
ctcggccgcaaactcgcgcagctgccggtcgacccgcggctgggccgcatggtcctggag
gccgaacgcaacgggtgcgtccgcgaggtcatgatcatcactgccgcgctgtccatccag
gacccgcgcgaacgccccgccgacaagcagcaggccgcccaggagaagcacgcccgcttc
accgacaaggagtcggacttcctcgcctacctcaacctgtggtcctacctgcaggagcag
cagcgggcgctgtccggcaaccagttccgcaagctgtgccgcaccgagttcctcaactac
ctgcgcgtccgcgagtggcaggacatctacagccagctcaagcaggtcgccaagggcatg
gggatcaccctcaactccgcccggcccgacccgcgccaggtgcacatctcgctgctgtcc
ggcctgctctcgcacatcggcctgaaggacccggagaagcacgagtacctcggcgggcgc
ggcgcccgcttcgcgatcttccccggatcctcgctgttcaagaagcagccccggttcgtg
atgtccgccgagctggtggagacctcccggctgtgggggcggatgaacgcccggatcgaa
ccggaatgggccgaagaactcggcggccacatcgtcaagcgcacctacagcgaaccgcac
tgggagaagaaccgcggcgcggtcatggcctacgagcgggtcacgctgtacggcgtgccc
atcgtcgtgcagcgcaaggtcggctacggcaagatcgacccggagctctcccgcgagctg
ttcatccggcacgccctggtcgagggcgactgggagacccaccacaagttcttccacgag
aaccggcggctactggaggaggtcgaggacctggagcaccgcgcgcgccgccgcgacatc
ctggtcgacgacgagacgctgttccagttctacgacgagcgcatcggcgccgaggtggtc
tcggccgcccacttcgactcctggtggaagcgagcccgccgcaccgaccccgacctgctc
ggcttcgagaagtcgatgctcatcaacgaggaggccgatgaggtccgggaggaggactac
cccgacacctggcgccagggctccctcaccttcccgctctcgtaccagttcgagccgggc
gccgacgccgacggcgtcaccgcgcacatcccgctcaaggtgctcaaccaggtcgaggag
gcgggcttcgactggcagatcccgggcctgcgccgtgagctggtcaccgcgctgatccgg
tccctgcccaagccgctgcggcgcaacttcgtgcccgttccagaccatgccgaggccgtc
ctcgggcggctcaccccctacaccgagccgctggtcgaggcgctgagccgcgagctcggc
cgggtgagcggggagcgcatcggcgccgacgactggcagctggacaaggtccccgaccac
ctgcggatcaccttccgcgcggtggacggcaagggccgcaagctggccgaggacaaggac
ctggccgccctgcgggcccagctcaagccccggctgcagaaggcgatctccgccgaggcc
aagggcatcgagaagacggggctgacctcctgggacttcggaccgctgagcaggaccttc
gagcggaagtcggccggtccggcggtccggggctacccggccctggtcgacgagggcgac
agcgtggccatcaggatcttcgacaccgaggccgaacagcgcgcggccatgtgggccggt
gtgcggcggctgctcctgctgcagatcccctcgccggcggcggtggtccagcgtggcctg
gacaacacggccaagctcgccctgagccacaacccgcacggcggtatcaacgcgctgttc
gacgactgcctgcgctgcgccgtcgacgcgctgatggccgaggccggggggccggtgtgg
gacggcgacgccttccaccggctacgcgagcacgtgcgcgccgaactcggcgacaccctg
gccgaggtcgtggcggccaccgcccgggtcctgggcaaggcccacgaggtgcagcgcaag
ttgaagggcagcacgagcctcgccgtcctgccgtccctcaacgacatccaggggcagctg
gccgggctgatccattccggtttcgtgaccgaaaccggtcgggggcgattggccgacctg
caccgctacctgcgggccgtggagtaccggctcgccaagctctccgagaacccgcgccgc
gaccaggtcaacatggccaaggtcgagcagatgcggcaggcgtgggagaagctgctcgcc
gggctgggtccgggcagggccgacgaatcgggggtgcgggagatccggtggatgctggag
gagctccgggtcagtttcttcgcccaggaattgggcaccgcccacccggtttcggagaaa
aggattctcaaggcgatcgaggcggcaaaggtcggatag
DBGET
integrated database retrieval system
