Nocardiopsis gilva: CDO52_25250
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Entry
CDO52_25250 CDS
T05022
Name
(GenBank) hypothetical protein
Organism
ngv
Nocardiopsis gilva
Brite
Glycosaminoglycan binding proteins [BR:
ngv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
CDO52_25250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4190
MpPF26
Motif
Other DBs
NCBI-ProteinID:
ASU85670
UniProt:
A0A223SC42
LinkDB
All DBs
Position
complement(5784960..5788292)
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AA seq
1110 aa
AA seq
DB search
MTDNGGGRYGSSEEEQERQKPGSWFTPTGDRYRTQSHYQDPYTGDDEVDGAAGDAAPARD
ADSTPGSFGGFPNTGGYPGMSGTRPGMAEPYPSALGGLGSDTREPTGAQPSQSGLGSAPG
QDLPGGLPPLPGAPGYPGATGGQPPVGGPSPADGPSSTGGAPATGEQSSLGGRPPAGGPT
HSGGWPGMPASEPDAPMPTSPQYDLGTGSAPAYDPRTAPGLPPYASGAPAPYAGPGDPMT
GSTPSEPSAGDARDRPMAGADDRPAPSAPSDGESTDEAPAGGVYRVPTGAQPAWTPQGDL
RDLPFNVPGGTGGYPGFGSSVRRERPDAPMAPTTEEAHPAAPDQQDHRGTDHAALGQELG
HPQEAAGPVPGVPAPEPGRPDDPSARLFGGPALGADTNVRNEPERTDHANGWAPETPADT
TDFSSSPAPSAFPPYSDQPERWDRADASGPQPRHGDGGVPGGATPDLAPKGPQDGFAPPR
DEPGRPAYGEPFGAPPATTGGFPAVSTDPAARSGAGYPAGGADEGRRDVRWDDPLSAGGT
WTPSDDAVQEAGWERSAGPVEPSLPTGEYTDELSRPYMGRQPAEEPPAGATTGQWESPWA
ATDVPPPTTGPFARIDPAAPSPAEGDTARSGEGVPRDPEAPGAGTPAPGGASSDLGGQLG
TGSGNTWAFSRDDPRLPDSVREEALRAEQKRRDGSPEHTTQFFAADPAGPSAADSEPGAD
SAPAADDPLASIAAQQAQARAQGGGAPDSDEGARLDDWGARLSPMPSPQRGVEDELGPDR
RGEAEYDQRGDAFGRGPGVDEAYAPEPWAPRPDVIGGGASGEPERGADTQSWAENTSYAD
AMQGTQAMPALPDDLGADRRGDAYADPPAGDRPAEYGYDGGPDGHYAYGDRHVEDGPGGW
SDHDGYDHRPGPDQGYADDHGPDAYGDYGPDRDGRFAPDGGDPYAPAPEHGDRYADHADY
DAGYRDRDGAEYYDDEGYDGYGEPAPEEPSSRRGRGGRDPIADDFPGFNDGPLDGGSGDP
YPGYDNIDYWPETESGATTTLWLGILGLVPVIGLFTALAAFITGPKAKRNIQASDGELEG
LNLVTTGTVLAAVGIVLFLVEAAVAVVMFI
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
gtgacggacaacgggggagggcggtacgggtcatcggaggaggagcaggagcggcagaag
ccgggctcctggttcacgccgactggcgaccggtaccgcacacagtcgcattaccaggac
ccctacacgggggacgacgaagtcgacggagcggcgggcgacgccgcaccggcacgcgac
gcggacagcacgcccggctccttcggtgggttcccgaacaccggcggctacccggggatg
agcggaacgcgcccgggcatggcggagccgtacccctcggccctcggcggcctggggtcg
gacacgcgtgagcccacgggcgcgcagccgtcgcagagcgggctggggtccgctcccggc
caggacctgccggggggccttccgccgctgcccggtgcgcccggctaccccggagcgacc
ggcggacagccgcctgtcggcggaccatcgcccgccgacggaccgtcgtccaccggcggc
gcaccggccacgggagagcagtcgtcgctcggcggccgaccgcccgcaggcgggccgacc
cacagtggcggctggcccggcatgccggcgtcggagcccgacgcgccgatgccgacgagc
ccccagtacgacctgggcaccggctcggcaccggcgtacgacccccgcaccgcaccgggt
ctgccgccctacgcgtccggcgctcccgcgccctatgccggaccgggcgatccgatgacc
ggttccaccccctcggagccctccgccggagacgcgcgggaccgtcccatggcgggagcc
gatgaccgacccgcgccatcggccccctccgacggtgagagcaccgacgaggcccccgcc
ggtggggtctaccgggtgcccacgggcgcgcaaccggcgtggacgcctcagggtgacctg
cgggacctgccgttcaatgtgcccggcggcacgggcggctaccccgggttcggatcgagc
gttcgccgagagcgtcccgacgccccgatggcgccgaccaccgaggaggctcaccccgcc
gcccccgaccagcaggaccaccgcgggacggaccacgccgccctcggccaggagctcggc
cacccgcaggaggcggccggtccggttccgggggttcccgcgccggagccgggacggccc
gacgatccctccgcccggctgttcggcggccccgccctcggtgccgacaccaacgtccgg
aacgagccggagcggacggaccacgcgaacggctgggcccccgagacccccgccgacacc
acggacttctcctcctccccggccccctcggcctttcccccgtactcggaccagcccgag
cggtgggaccgcgccgacgcgtccgggccccagccccgacacggggatggcggggtcccc
ggcggggcgacaccggacctggccccgaaaggcccccaggacggcttcgcgccaccgcgt
gacgagcccggccgccccgcctacggtgagcccttcggtgcccctccggcgacgaccggc
ggcttcccggcggtctcgacggatcccgcggcccggtccggtgcgggctatccggccggt
ggcgcggacgaaggccgccgggacgtccggtgggacgacccgctgagcgcgggcggcacc
tggaccccgtcggacgacgctgtccaggaggccggctgggagcggtccgccggaccggtg
gaaccgtcgctgcccaccggcgagtacaccgacgagctctcccggccctacatggggcgg
cagcccgcggaggagcccccggccggggccaccaccggccagtgggagagcccgtgggcc
gcgaccgacgttcccccgccgaccaccggtccgttcgcgcggatcgacccggccgcgccg
tcgcccgccgagggcgacaccgcgcgaagcggggagggggtaccgcgcgacccggaggct
cccggcgccggcaccccggcgcccggcggtgcgtcgtcggacctcggcggccagctcggt
acgggaagcgggaacacctgggcgttcagcagggatgacccccgcctgcccgactccgtg
cgcgaggaagcgctgcgggccgagcagaagcggcgggacggttcgcccgagcacaccacg
cagttcttcgcggccgaccccgccggtccgtccgcggcggactccgaaccgggtgcggac
agtgccccggcggccgacgacccgctggcgtccatcgccgcccagcaggcgcaggcgcgc
gcgcaggggggcggggcgcccgactccgacgagggcgcgcgtctcgacgactggggcgca
cggctgagcccgatgccgtcgccgcagcggggggtcgaggacgaactcggtccggaccgg
cgcggcgaggccgagtacgaccagcgcggcgacgcgttcggtcgcggccccggcgtggac
gaggcctacgcccccgagccgtgggccccgcggcccgacgtgatcggcggcggagcgagt
ggcgagcctgagcgcggcgcggacacgcaatcctgggcggagaatacgagctacgccgac
gcgatgcaggggacgcaggcgatgcccgcgctccccgatgacctcggcgcggaccgccgc
ggcgacgcgtacgccgaccctcccgcgggggaccggccggcggagtacggctacgacggc
ggtcctgacggccactacgcctacggcgaccgccacgtcgaggacggacccggcggctgg
tcggaccacgacggttacgatcaccggcccggccccgaccagggctatgccgacgatcac
gggccggacgcctacggcgactacggtccggaccgcgacggccgcttcgcgcccgacggc
ggtgacccgtacgctccggcgcccgagcacggcgaccggtacgccgaccacgccgactac
gacgccggctaccgcgaccgggacggtgcggagtactacgacgacgaggggtacgacggc
tacggcgagcccgcacccgaggaaccgtcctcgcgccggggccgtggcggtcgcgacccg
atcgccgacgacttccccggtttcaacgacggtccgctggacggcggcagcggcgacccc
tacccggggtacgacaacatcgactactggccggagacggaatccggagccaccaccacc
ctgtggctcggcatcctcggtctcgttccggtgatcggcctgttcaccgcgctcgcggcg
ttcatcaccgggccgaaggccaagcgcaacatccaggcctccgacggtgagctcgaaggc
ctgaacctggtgaccaccggtaccgtcctcgccgcggtcggcatcgtgctgttcctcgtc
gaggccgctgtggccgtcgtgatgttcatctga
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