Nitrobacter hamburgensis: Nham_2112
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Entry
Nham_2112 CDS
T00348
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nha
Nitrobacter hamburgensis
Brite
KEGG Orthology (KO) [BR:
nha00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nha03016
]
Nham_2112
Enzymes [BR:
nha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Nham_2112
Transfer RNA biogenesis [BR:
nha03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Nham_2112
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABE62909
UniProt:
Q1QLI8
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All DBs
Position
2355097..2356287
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AA seq
396 aa
AA seq
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MRGDKGKKTGYGALMDLITTTAELASVCARLANYPVVTVDTEFLRETTYYPLLCVVQMAS
PDEAVVVDALAEGIDLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGIIPHPIFDTQVAA
MVLGYGDSIAYDALVERVNGHRPDKTHRFTDWSRRPLTKDQLEYAVADVTHLRDVFAALD
ADLKKRGRGDWVSEEMEVLTSPKTYDFHPERAWERLKTRVRKPKDLAVMMEVAAWREQEA
QSRNIPRSRVLKDDAVGDIAIHAPATPERLATLRSLPKGFEKSQWGADIVAAVQRGLARD
PRELPKIEKPRNNTNGAATVELLKVLLRMTSERHAVASKVIATVDDLERIAADDAADVGA
LRGWRRELFGEAALALKHGQLALAIEKGRVVRVERS
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcgacaagggtaaaaagacgggctatggagcgctcatggacctgatcacgacc
accgcggaactggcttccgtctgcgctcgcctcgccaactacccagttgtcaccgtcgat
acggagttcctccgcgagaccacctactaccccctgctctgcgtggtccagatggcgagc
ccggacgaagccgtggtggtcgatgctctcgccgagggaatcgacctgaagccctttttc
gacctgatgtcgaacgagcgcgtcctgaaggtctttcacgccgcccgccaggacattgaa
atcgtctggcatcaggccggcatcattccgcacccgatcttcgatacgcaagtggctgcc
atggtgctcggatatggcgattccatcgcctatgacgcgctggtcgagcgcgtcaacgga
caccgcccggacaagacccatcgcttcaccgactggtcgcgccggcctctgaccaaggac
caactcgaatacgcggtcgctgacgtcacccatctccgtgatgtctttgccgcccttgat
gccgacctcaagaagcgcggccgcggcgactgggtcagcgaggaaatggaggttttgacc
tcgccgaaaacctacgacttccaccccgaacgcgcctgggagcggttgaagacccgggtt
cgcaagccgaaggatctcgccgtcatgatggaagtggcggcctggcgcgaacaggaagcc
cagagccggaacattccgcgatcgcgcgtgctgaaagacgacgccgttggcgatatcgcg
atccatgcaccagcaaccccggagcggctggcaacgctgcgctcgctgccgaaaggtttt
gaaaaatcgcagtggggcgccgacattgtcgcagcggtccagcgcggtctcgcccgagac
ccgcgcgagttgcccaagatcgagaaaccgcgaaacaataccaacggcgccgccacggtg
gagcttctcaaggttcttctgcgtatgacatccgagcgccatgccgtcgccagcaaggtg
atcgcgaccgtggacgatctcgagcggatcgccgcggatgacgcggccgacgttggtgcg
ctgcgcggctggcggcgcgaactgttcggcgaggccgcgctcgcgctgaagcatggccag
ctggcattggcgatcgaaaagggccgcgttgtgcgcgtggagcgaagctga
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