Nitrobacter hamburgensis: Nham_2307
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Entry
Nham_2307 CDS
T00348
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nha
Nitrobacter hamburgensis
Pathway
nha03410
Base excision repair
nha03430
Mismatch repair
nha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Nham_2307
03430 Mismatch repair
Nham_2307
03440 Homologous recombination
Nham_2307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nha03400
]
Nham_2307
DNA repair and recombination proteins [BR:
nha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Nham_2307
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Nham_2307
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nham_2307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABE63099
UniProt:
Q1QKZ8
LinkDB
All DBs
Position
complement(2562977..2564818)
Genome browser
AA seq
613 aa
AA seq
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MTLPASALPVEAPDAFLGVSHSATGRLWRDRLDARGAARALAIAQRHQLPEMLARVIAGR
GVEVDAVADFLDPTIRRLMPDPFTVTQMEAAAKRLADAAMRGETVAIFGDYDVDGATSAA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNVEAINALAARGATLLVTVDCGTTSIEPLAVAK
QQGMSVVVIDHHQCGDDLPEVEALVNPNRPDDLSGLGHLAAVGLVLVTLVALNRELRQRG
FWTDERPEPDLLNMLHHVALGTVADVAPLTGLNRAFVAKGLIALRRRDHVGHTALMDVAR
LNGPPEAWHLGFMLGPRINAGGRIGRADLGVRLLLEGDVSEAARIAAELDRLNVERRVIE
QAAEAQAEAEALASLGLEDKGAVIVTASEGWHPGVVGLVASRLKDKFSRPAFVVALEPGG
IGTGSGRSIGGVDLGKAVRQAVTDGVLLKGGGHAMAAGVTLRKERLAEFRAYMEKALAAD
VARSRHVRELFIDGAVSARAVTPEFVATLNRAGPFGAGNPEPVVALPSHQLIYADEVGQA
HLRLRFKSGDGAIVNGIAFRAIGQPLGNVLTQMRGQPLHVAGSLAVDRWQGAERVQLRVS
DVALPTVQPEIIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgcccgcctccgcattgccggtcgaagcgcctgacgcctttctcggcgtgtcg
cattcggcgaccgggcgtctgtggcgcgatcgcctcgatgcgcggggcgcggcgcgcgcg
ttggcgatcgcccagcgccaccagttgccggagatgctggcgcgggtgattgccgggcgg
ggcgtcgaggtcgatgcggtcgcggattttctcgatccgaccatccgccggctgatgccc
gatcccttcaccgtgacgcagatggaggcggcagccaagcggttggcggacgccgcgatg
cgcggtgagacggtcgcgatcttcggcgattacgatgtcgacggcgcaacctcggcggcg
ctgctcgcctggcatctgcgccattgcgggctggatccgctgatccatattcctgatcgg
atttttgagggctacggcccgaatgtcgaagccatcaacgcgcttgcagccaggggcgca
acgctgctggtgacggtcgactgcgggaccacgagcatcgagccgctggcggttgccaaa
cagcagggcatgtcggtcgtggtgatcgatcatcaccagtgcggcgacgatctgcccgag
gtcgaggcgctggtgaatccgaaccggccggacgatctctccgggctcggacatctcgcc
gccgtcggtctcgtattggtgacgctggtcgcgttgaaccgcgaactgcgtcagcgcggc
ttctggaccgacgaacggccggagccggatctcctgaacatgctgcatcacgtcgcgctc
ggaacggtcgccgatgtcgcgccgctgaccggcctcaaccgtgccttcgtcgcgaagggg
ttgatcgcgctacgccgccgcgatcatgtcggccacaccgcactgatggatgtcgcacgg
ctgaacggcccgccggaagcctggcatctcggtttcatgctgggaccgcgcatcaatgca
ggcggccgtatcggacgcgccgatctcggcgtgcggttgctgctggaaggcgatgtctcg
gaggccgcgcggatcgcggccgaactcgatcgcctcaacgtcgagcgccgcgtgatcgag
caggccgccgaggcgcaggccgaagccgaagcgctggcctcgctcggtctcgaggacaaa
ggggccgtcatcgtcacggcgtccgagggttggcatcccggcgtggtcggtctcgtcgcg
tcgcggttgaaggacaagttttcccggcccgccttcgttgtggcgctggagccgggtggt
atcggcaccggatcgggccgctccatcggcggcgtcgatctcggcaaggcggtgcggcag
gccgtgaccgacggcgtgctgctcaagggcggcggtcacgccatggcggcgggcgttacg
ctgcgcaaggagcggctggcggaattccgcgcctacatggaaaaggcactcgccgccgat
gtcgcgcggtcgcgtcatgtccgcgaactcttcatcgatggcgcagtcagcgcgcgggcg
gtgacgcccgagttcgtggcgacgctcaatcgcgccgggccgttcggcgcgggcaatccg
gagccggtggtggctctgccgtcgcaccagttgatctatgccgacgaggtcgggcaggcg
catcttcggctgcgattcaaatccggtgacggcgctatcgtgaacggcatcgcgttccgc
gcgatcggccaaccgctcggcaacgtcctgacgcagatgcgcggccagccgctgcatgtg
gcgggatcgctggcggtggaccgctggcagggcgcggagcgcgtgcagttgcgcgtcagc
gatgtggccttgccgacggtccagccggagatcattcgctga
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