Nitrobacter hamburgensis: Nham_2841
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Entry
Nham_2841 CDS
T00348
Name
(GenBank) Helicase RecD/TraA
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
nha
Nitrobacter hamburgensis
Pathway
nha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Nham_2841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nha03400
]
Nham_2841
Enzymes [BR:
nha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Nham_2841
DNA repair and recombination proteins [BR:
nha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Nham_2841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
HHH_2
Helicase_RecD
NTPase_1
PIF1
nSTAND3
DEAD
AAA_22
CbiA
TrwB_AAD_bind
AAA_28
TsaE
MeaB
AAA_24
AAA_29
AAA_16
NPHP3_N
AAA
RsgA_GTPase
Mg_chelatase
UvrD-helicase
NACHT
Motif
Other DBs
NCBI-ProteinID:
ABE63611
UniProt:
Q1QJI6
LinkDB
All DBs
Position
complement(3133607..3135808)
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AA seq
733 aa
AA seq
DB search
MKPQPEPSSREVLAGLVERVTYHNDGNGYCVLRIKARGHRELVTVVGHAAVISAGEWITA
LGEWVNDRTHGQQYRAKFLKTSEPTSLDGIEKYLGSGMIRGIGPVYAKKLVRAFGEKVFD
TIEAEPERLREVTGIGPVRAYRIAAAWAEQKIVREIMVFLHSNGVGTARAVRIYKTYGAD
AVQVMTENPYRLARDIRGIGFKTADAIAMKLGIEKTAMIRIRAGISYALTEAMDEGHCGL
PTDELVPLAEKLLEVPVELVRIALDLERTEGTVIADSVGETSCVFLAGLHRAERSIAERL
IRLANGTLPWPWINPDKALPWVEERIGLTLAGSQMAAIRLALMSKALVMTGGPGVGKTTI
VKGILRILAAKGARLLLCAPTGRAAKRMTEATGFEARTIHRLLEVDPKGGGFKRGEDNPL
DCDLLVVDEASMVDVMLMQSLIKAAPDKSALLIVGDIDQLPSVGPGQVLADVISSGAVPV
VRLTEVFRQAAQSRIIISAHRINHGVIPDLSLPGTDSDFYFVQADDLETVVQRIIELVKT
RIPNRFGLDPIRDIQVLCPMNRGGVGARSLNIELQTALNPAGERKVERFGWTFAPGDKVM
QIENDYDKEVYNGDIGYIDDVSFEDSELTASFDGRTVIYGFGELDTLVPAYAATIHKSQG
SEYLAVVIPVMTQHYTMLQRNLLYTGVTRGKKLVVLVGQKKAVAIAVRNVSGRRRWSKLN
EWLVSRTLSMPIR
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgcagccggaaccatcaagccgggaagttctcgcgggccttgttgagcgcgtc
acataccacaacgacgggaatggctactgcgttttgcggatcaaggcgcgcggccaccgc
gaactggtcactgtagtcgggcatgccgcggtgatctccgctggcgagtggattaccgca
ttgggcgaatgggtcaatgaccgaacccatggccaacagtacagggcgaagttcttaaag
acctcggaaccgacatcactcgacggtatcgagaaatacctcggctccgggatgattcgc
ggcatcgggccagtctatgccaagaagctggtgcgcgccttcggtgagaaggtgttcgat
accatcgaggcggagcccgaacgcttgcgcgaggtaacgggcatcggcccggttcgggcc
taccgcattgcagccgcttgggccgaacagaagatcgttcgcgaaatcatggtcttcctg
cacagcaatggcgtcggcacagcgcgggcggtgcgcatttataagacctatggcgccgac
gccgtacaggtcatgaccgagaacccctaccgcctcgcgcgtgacattcgcggcatcggc
ttcaagactgccgacgcgatcgcgatgaaactcggcatcgagaagaccgcaatgatccgg
attcgggccggaatctcctatgcgctgaccgaggcgatggacgaagggcactgcggtctg
ccgacggatgagctggtgccgcttgccgagaagctgcttgaggtcccggtggaactagtg
cgcatcgcgcttgatctcgaacgaacagaaggcacggtcatcgcggacagtgtaggcgaa
acgtcctgcgtatttctggcgggcctgcatcgggcggagcgctcgattgccgagcggctg
atccggctcgcgaacggcacactgccctggccctggatcaatccagacaaggcactgcct
tgggtcgaggaacggatcgggcttacccttgctgggagccagatggctgcgatccggctc
gcattgatgtccaaagcgttggtcatgaccggcggtcctggtgtcggcaagaccaccatc
gtcaaaggtattctccgtattctcgcagcaaagggggcaaggctcctgctatgcgcgccg
accggccgcgccgccaagcgcatgaccgaggcgaccggttttgaggccaggacgatccac
cggctgctggaggttgaccccaagggcggcggcttcaagcgcggcgaagacaatccgctc
gactgcgacctgcttgttgtcgacgaagcctcaatggtagacgtcatgctgatgcagtca
ctcatcaaggcagcgccagacaagtctgcccttttgatcgtcggcgacatcgaccagctt
ccttcggttgggccaggccaagtgctggccgacgtcatttcatccggtgctgtgccggtg
gtgcgtctcaccgaggtgttccggcaggccgcgcaaagccgcatcatcatcagcgcacat
cgcatcaatcacggggtcatccccgatctcagcctgcccggcacggatagcgatttctac
ttcgtgcaagcggacgatctagaaaccgtcgtacagcgcattatcgagttggtgaagaca
cggatccccaatcgcttcggcctcgacccaattcgggacattcaggttctgtgtccaatg
aaccggggcggcgtcggtgcgcgctcgctaaacatcgaactgcagacggctctgaacccc
gccggcgagcgcaaggtcgagcgctttggttggacgttcgcgcccggcgacaaagtgatg
cagatcgaaaacgattacgacaaggaggtctataacggcgacatcggctatatcgacgat
gttagtttcgaagacagcgaactcaccgcaagcttcgacggccgcacggtcatttatggg
tttggcgagctcgacacgctggtgccggcctacgcagcaaccatccataagagccagggt
tcggaatacctcgccgttgtgatcccggtgatgacgcagcattacaccatgctgcagcgg
aacctgctctataccggcgtcaccaggggcaagaagctggtcgtgctggtcggtcagaag
aaggccgtcgccatcgcggttcggaacgtttcggggcgaaggcggtggtcgaagttgaac
gagtggctggtatcaagaacattgtcgatgccgataagatga
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