Fusarium vanettenii: NECHADRAFT_59311
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Entry
NECHADRAFT_59311 CDS
T01612
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nhe
Fusarium vanettenii
Pathway
nhe03013
Nucleocytoplasmic transport
nhe03015
mRNA surveillance pathway
nhe03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nhe00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
NECHADRAFT_59311
09122 Translation
03013 Nucleocytoplasmic transport
NECHADRAFT_59311
03015 mRNA surveillance pathway
NECHADRAFT_59311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhe03019
]
NECHADRAFT_59311
03041 Spliceosome [BR:
nhe03041
]
NECHADRAFT_59311
Enzymes [BR:
nhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NECHADRAFT_59311
Messenger RNA biogenesis [BR:
nhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
NECHADRAFT_59311
Spliceosome [BR:
nhe03041
]
Complex C
Other components
EJC/TREX
NECHADRAFT_59311
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
NECHADRAFT_59311
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
DUF6066
Motif
Other DBs
NCBI-GeneID:
9664109
NCBI-ProteinID:
XP_003052696
JGI:
59311
UniProt:
C7YMN9
LinkDB
All DBs
Position
3
AA seq
434 aa
AA seq
DB search
MSHEEDLIDYSDEEIGGNETAATTSNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE
LLRAIADCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVS
VVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKETCPHIIVGTP
GRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATLSE
EVKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLDDLQFNQVIIF
VRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDI
ERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVALPE
FPKEGVDASTYMAS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatgaggaggatctcatcgattactccgatgaggagatcggcggcaacgagacc
gccgccaccacctccaacggcaagaagggcgagctcgccgccggcaacaatgtcgacaag
aagggcagttacgtcggtattcactcgaccggtttccgcgacttcctgctcaaggccgag
ctccttcgcgcgatcgccgactgcggtttcgaacatccatcggaggtccaacaaacttgt
atccctcaggctcttctcggcggtgacatcatctgccaagccaagtccggtctgggaaag
acggccgtctttgtcctcgcgactcttcagcaggtcgagcctgtgaacggagaggtctcg
gtggttgtcatgtgccacacacgtgagctggcctaccagattcgggacgagtacaaccga
ttcagcaagtacatgcctgacatcaagactggcgtgttctatggtggtactcccatcaag
acggatgtcgagaccctgaagaacaaggagacctgccctcacatcattgtcggcactcct
ggtcgtcttaaggctcttgtccgtgacaaggctctgcgtctcggcagcgtccgcattttc
gtcctcgatgagtgcgacaagatgcttgaccagcctgacatgcgtaccgatgttcaggat
gtgttccgcgctactcctcagcagaagcaggttatgatgttctcggccactctgtccgag
gaggtcaagcccatctgccgaaagttcatgcagaaccctaccgagcactacgttgatgag
gacaccaagctcacgctccacggtctccagcagtactacatcaagctggaggagaaggag
aagaaccgtaagctcaacgagctcctggatgatctgcagttcaaccaggtcatcattttc
gtccgcagcaccgtccgtgctaccgagcttgacaagctactccgggaatgcaacttccct
tcgatcgctgttcactcgggtgtcagccaggaagaacgtatccgtcgctacaaggaattc
aaggagttcaagaagagaatctgcgttgctactgacgtcttcggccgaggtattgatatt
gagcgtatcaaccttgccatcaactacgatctttcaaacgacgccagctcgtaccttcac
cgagtcggtcgcgccggtcgtttcggtaccaagggtctggccatctctttcgtcagcacc
gaccaggaccaggaggtgctgaaggagattgagaagcgattcgaggtcgcccttcctgaa
ttccccaaggagggtgttgatgccagcacttacatggcttcctag
DBGET
integrated database retrieval system
