KEGG   Fusarium vanettenii: NECHADRAFT_85726
Entry
NECHADRAFT_85726  CDS       T01612                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
nhe  Fusarium vanettenii
Pathway
nhe03018  RNA degradation
nhe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nhe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NECHADRAFT_85726
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NECHADRAFT_85726
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nhe03019]
    NECHADRAFT_85726
   03041 Spliceosome [BR:nhe03041]
    NECHADRAFT_85726
Messenger RNA biogenesis [BR:nhe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     NECHADRAFT_85726
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     NECHADRAFT_85726
Spliceosome [BR:nhe03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    NECHADRAFT_85726
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 9677798
NCBI-ProteinID: XP_003039863
JGI: 85726
UniProt: C7ZPI2
LinkDB
Position
10
AA seq 125 aa
MLPLGLLNAAQGHPMLVELKNGETLNGHLVSCDTWMNLTLREVVQTSPEGDKFVRLPEVY
VKGNNIKYLRVPDEIIDQVSESQRGQQGNFRGGRGGQSRGDHGGRGGDRGRGRGGGRGRG
RGRGQ
NT seq 378 nt   +upstreamnt  +downstreamnt
atgctacccctcggtctactaaacgcggcccaaggccaccccatgctggtcgaacttaag
aatggcgagactctcaacggacatctggtttcctgcgacacatggatgaaccttacactc
agggaggtggtccagaccagccctgagggcgacaagtttgtgcggttaccggaggtttac
gtcaaaggaaacaacatcaaataccttagagtgccagacgagattatcgaccaggttagc
gagtcccagagaggtcagcaaggaaacttccgcggcggacgaggaggacagtcaagaggc
gatcacggtggacgaggcggtgaccgtggacgcggtcgtggtggtggtagaggccgcgga
cgaggacgaggtcaataa

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