Candidatus Nanohalovita haloferacivicina: HBNXNv_0374
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Entry
HBNXNv_0374 CDS
T10381
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nhf Candidatus Nanohalovita haloferacivicina
Pathway
nhf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nhf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBNXNv_0374 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhf03019
]
HBNXNv_0374 (rnj)
Messenger RNA biogenesis [BR:
nhf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HBNXNv_0374 (rnj)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WEL23229
LinkDB
All DBs
Position
complement(335093..336406)
Genome browser
AA seq
437 aa
AA seq
DB search
MKVYTLGGYEEVGKNMTAVEVNGEVVIFDMGYDMESVVSAEGHVDEMTTNQSLDIGAVPE
DEPVLDKNVVGIVIGHGHLDHVGGIPKLAGSHDCPIYCTPYTGKIVERMIDDDRKNVDNQ
LITVEKGDEMEISGEFTLEFAHVNHSIPDATLSLLDTSEGYVVYGNDMKIDRSPVIEKTT
DVERLKEVGEEGVKAMIPGTTRVSEPGRARSEKSVEVELGDVLNSCYQAGGAVIMSTFSS
QISRLNSIIEANNGRRKIAFVGRSLREYVESAEELDLIDTSQIEVVSYFDECDDLMSRVD
GERDEWLVVATGNQGEKGAQLDKIASGTYGFDFNEGDHVIFSSQVIPSPVNEANRYELEE
KMREKGVRIYPGIHTTGHAHKEDHRDFIDFLQPDNIIPSHGTIQKLGDYVELAREEGYSL
GDDVFVSENGKCINLDQ
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttacacacttggcggttatgaagaagtaggaaagaacatgacggccgtagaa
gttaacggagaagtagtcattttcgacatgggttacgatatggagagcgttgtctctgct
gaaggccatgttgacgagatgacaacaaaccagagtttagacattggcgcagtccctgag
gatgagccagttcttgataaaaacgttgtaggaattgtaataggtcacggacaccttgac
cacgtcggaggcattccaaagcttgccggcagtcacgactgtcctatctactgcactcct
tacaccggtaaaatcgtagaaagaatgattgacgacgatcgcaagaatgtcgacaaccag
ttgattacagttgagaaaggagatgagatggagatctcaggcgaattcactcttgaattt
gctcacgtgaaccactcaatccctgacgcaactctaagtcttctggacacttccgaaggc
tacgtagtctacggaaacgacatgaagatcgacagaagccctgtaatcgagaaaactacc
gatgtcgagagactgaaggaagttggagaggaaggagtgaaggccatgatccctggaaca
acaagagtttcagagccaggaagggcccgatcagagaaatctgtcgaagtcgaacttgga
gacgtactgaactcctgctatcaggcaggcggcgcagtaatcatgtcaacattctcaagc
cagatcagcagactgaactcgatcatcgaagccaacaacggccgcagaaagatcgcgttc
gtcggaagatcactcagagaatacgttgaatcagcagaagaactagacctgatcgacaca
agccagatcgaagtagtttcatacttcgacgaatgtgacgacctgatgagccgtgttgac
ggcgaaagagacgaatggcttgtcgttgcaacaggaaaccagggagagaaaggcgcacag
cttgacaagatcgcatccggaacatacggattcgacttcaacgaaggcgaccacgtaatc
ttctcctcacaggtaattccaagcccagtcaacgaagccaacagatacgagcttgaagag
aaaatgagagagaaaggtgtcagaatctacccaggaatccacacaacaggtcacgcacac
aaggaagaccacagagacttcatcgacttcctacagccagacaacatcattccttcacac
ggaacaatccagaaactcggcgactacgtagaactcgcaagagaagaaggatacagtcta
ggcgacgacgttttcgtcagcgaaaacggcaaatgcatcaacctggaccagtaa
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