Candidatus Nanopelagicus hibericus: B1s21160_00590
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Entry
B1s21160_00590 CDS
T05090
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nhi
Candidatus Nanopelagicus hibericus
Pathway
nhi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nhi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B1s21160_00590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nhi03021
]
B1s21160_00590
03400 DNA repair and recombination proteins [BR:
nhi03400
]
B1s21160_00590
Enzymes [BR:
nhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B1s21160_00590
Transcription machinery [BR:
nhi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B1s21160_00590
DNA repair and recombination proteins [BR:
nhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B1s21160_00590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
SocA_Panacea
Motif
Other DBs
NCBI-ProteinID:
ASY12872
UniProt:
A0A249K7Z7
LinkDB
All DBs
Position
119675..123499
Genome browser
AA seq
1274 aa
AA seq
DB search
MLDVNFFDELRIGLASTDNIREWSFGEVKKPETINYRTLKPEKDGLFDEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITEVDTEARTEDMPTLEKKYGADVKKIESRRDLELDTRTKKMESD
LSDLEDEGAKADARRKVREAGERELKTIRDRSQKELDRLDAVWNKFKNLKVQDLEGDESI
YRELRDRYGIYFKGSMGAQAIQSRLETFDLKAEFDKLNELSQTGKGQKKTRAIKRLKVVN
SFLNTRNKPASMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLADL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPITSPTQDMVLGLYFLTSLREKQLGEGR
AFSSIAEAVMAFDQGSLSLQAKIKLRIDKSGVAEVKETTLGRALFNEVLPADFPFVDYDV
TKKLLGLIVDNLAEGYAKVTVAQTLDALKSLGFYWATRAGVTISINDVVTPGRKREILEG
YETKADKVQSQYEKGLITDDERRQELIEIWTLATNEVAKEMEDNFPRTNPVWMMVYSGAR
GNMMQIRQIAGMRGLVANPKGEIIPRPIKSNFREGLSVLEYFISTHGARKGLADTALRTA
DSGYLTRRLCDVAQDVIIREEDCGTDRGLTLKIAAKDATGTLLRDDHVETSLFGRNLAED
VTASGKVILAAGTDLGDRNIDTLVAAGVEEVKVRSVLTCDSKVGQCAMCYGRSMAAGKIV
DVGEAVGIIAAQSIGEPGTQLTMRTFHTGGAQLLGETQITHGLPRVQELFEARTPKGVAP
IAEAAGTVSFLEDAKGKKIVVTPEDGGEAVAYPITRRQKLLVEEGVRVTVGQQLVVGAID
PKQVLRILGPRQTQIHLVSEIQEVYRMQGVSIHDKHIEIIVRQMLKRITVLEPGDADLLP
GELVERGRFEEENRRVVSTGGKAASGRPELMGITKASLATESWLSAASFQETTRVLTDAA
LSEKSDPLLGLKENVIIGKLIPAGTGLARYRNVRVEPTEEAKAAVYAAYDQYEFTPFESQ
GSGEAVRLDDLEVR
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgttaacttttttgatgagttaagaattggtcttgcctcaactgacaatatt
cgtgaatggtcatttggtgaggttaaaaagccagagacaattaattaccgcacactgaag
cctgaaaaagacggattatttgatgaaaagatcttcggaccaactcgtgactgggaatgt
tattgcggtaagtacaagcgagtgcggtttaagggaattatctgcgagcgatgcggcgtt
gaggtaactcgtgccaaggtgcgtcgtgagcggatgggtcatattgaacttgcagctcca
gtaacccatatctggtacttcaagggtgtcccaagccgtcttgggtatttattagattta
gcaccaaaggatttagaaaaagtaatttactttgccgcttacatgatcaccgaggttgat
actgaggccagaactgaagatatgccaactttagaaaagaagtatggcgctgatgttaaa
aagattgagtctcgtcgtgatcttgaattagatactcgcaccaaaaagatggaatctgat
ttgtcagatctagaggatgagggcgctaaagcagatgctcgccgtaaggtgcgcgaggct
ggtgagcgagagttaaaaactattcgtgatcgctctcaaaaagagctagatcgtttggat
gcagtttggaataagtttaagaatcttaaagttcaagatcttgaaggtgatgaatcaatt
tatcgtgagcttcgtgatcgttacggaatctacttcaaaggatctatgggcgcacaagct
atccaatcacggcttgaaacctttgatctaaaagctgagtttgataaattaaatgagtta
tcacaaactggtaagggtcagaagaaaacccgagcaattaagcgattaaaagtagttaac
tcattccttaatactcgcaacaaaccagcatcaatggtgcttgattgtgtgccagttatt
ccgccagatcttcgtccaatggttcagctagatggtggccggtttgcaaccagtgatcta
aatgatctttatcgccgagtaattaaccgtaataatcgtttaaagcgtcttgccgattta
ggtgcacctgagattattgttaataacgaaaagcgtatgttgcaagaagcggttgactca
ttatttgataatggccgtcgtggtcgtccagtaactggacctggaaaccgtccactgaaa
tcactctctgacatgttaaagggaaagcagggacgtttccgtcaaaacctacttggaaag
cgtgttgattactctggccgttctgtaattgtggttggtccacaacttaaattgcatcag
tgtggtctgcctaagcagatggcacttgagttgttcaaaccatttgtaatgaaacgtctt
gtcgatttaaaccatgcacaaaatattaaatctgctaaacgaatggttgagcgtgctcga
ccagtagtttgggatgtgcttgaggaagtaattgctgagcatccagtgctactaaaccgt
gcaccaaccctgcaccgccttggtattcaagcatttgaaccacaactagttgaaggaaaa
gctattcagattcacccattagtttgtactgcatttaacgcagactttgatggtgatcag
atggcggttcacttgccactttcagctgaagcacaagcagaggctcgagtattaatgctt
tctagcaataatattttgtctccggcatcaggtcgaccaattacatctcctacccaggat
atggtgcttggtctttacttcctgacctcacttcgtgagaagcaattgggtgaaggcaga
gcattctcatctatcgcagaagcggtaatggcatttgatcagggcagcctttcattgcaa
gcaaagattaagctgcgtattgataagagtggtgttgctgaggttaaggaaaccacttta
ggtcgtgctttatttaatgaggtactacctgctgatttcccatttgttgattacgatgta
acaaagaagctacttggtttaattgttgataatttggctgaaggttatgccaaggtaaca
gtggcacaaacacttgatgcccttaaatcacttggtttttactgggcaaccagagctggt
gtcacaatctcaattaatgatgtggtaacaccaggtcgcaagcgcgaaatcttggaaggg
tatgaaactaaggcggataaggttcaatcacagtatgaaaagggattgattactgatgat
gagcgtcgccaagagttaattgaaatctggacacttgccactaatgaggttgctaaggag
atggaagataacttccctcgcaccaacccagtttggatgatggtttattcaggtgctcgt
ggaaatatgatgcagatccgccaaattgctggaatgcgcggacttgtagctaacccaaag
ggtgaaattattcctcgtccgattaaatcaaacttccgtgaaggactttcagttctggag
tacttcatttcaactcacggtgctcgtaaaggtttggcagataccgcacttcgtaccgca
gactcaggttatttaacccgtcgtctttgcgatgttgcgcaagatgtaattattcgcgag
gaagattgcggaactgatcgtggtctaacgctaaagattgcggcaaaagatgcaaccggc
acattacttcgtgatgaccatgtcgaaacatcactctttggccgtaacttagctgaggat
gtaactgcatcaggcaaagtaattttggcagcaggtactgatcttggtgatcgcaatatc
gacaccttggttgcagcaggagttgaagaggttaaggttcgctcagttctaacctgcgat
agcaaggttggccaatgtgcaatgtgttacggccgatcaatggcggctggcaagatagtt
gatgtcggtgaagctgttggaattattgctgcgcaatcaattggtgagccaggaacccag
ttaacaatgcgtaccttccatactggtggagcgcaattacttggtgaaactcaaattact
catggtctacctcgtgttcaagagttgtttgaggccagaacaccaaagggtgtggcacca
attgccgaggctgctggcacggtttcattcttagaggatgcaaagggtaagaagattgtg
gtcaccccagaagatggtggtgaagcggttgcttatccaattactcgtcgtcaaaaactt
ctagttgaagagggtgttcgagttactgtgggtcaacaattagttgttggcgcaattgat
ccaaagcaggtacttcgaattctgggacctcgtcaaacacagatccacttggtaagtgaa
attcaagaggtttatcgtatgcaaggtgtatcaattcacgataagcacattgaaattatt
gttcgccaaatgttaaagcgcatcactgtgctagagccaggagatgctgatctacttcca
ggtgagttagttgagcgtggtcgctttgaagaagagaatcgtcgcgtagtttcaactggt
ggcaaagcagcttcaggacgtcctgagttaatgggaattactaaggcctcacttgcaact
gagtcatggctatcagccgcctcattccaagagacaactcgtgttctaacggacgctgct
ttatctgagaagagtgatccactacttggtctgaaggaaaacgtaattatcggtaagttg
attccagctggaactggacttgctcgttatcgcaatgttcgagttgagccaaccgaggaa
gcaaaagcagcagtttatgcagcttatgaccagtacgagttcacaccatttgaatcacaa
ggttcaggtgaagcggttcgtttggatgatctagaggttcgttaa
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integrated database retrieval system
