Candidatus Nanopelagicus hibericus: B1s21160_04495
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Entry
B1s21160_04495 CDS
T05090
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nhi
Candidatus Nanopelagicus hibericus
Pathway
nhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1s21160_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhi03019
]
B1s21160_04495
03009 Ribosome biogenesis [BR:
nhi03009
]
B1s21160_04495
Enzymes [BR:
nhi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B1s21160_04495
Messenger RNA biogenesis [BR:
nhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1s21160_04495
Ribosome biogenesis [BR:
nhi03009
]
Prokaryotic type
rRNA processing factors
B1s21160_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
PCB_OB
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ASY13573
UniProt:
A0A249K9V0
LinkDB
All DBs
Position
complement(871452..873548)
Genome browser
AA seq
698 aa
AA seq
DB search
MADEPKAPRKRAAKKEAEGESKKVSKKSAAIPVPLFQAAPVSKSPKAVKPVKTEPADVEQ
QAKGDESEKEEFRRRRRRGGRGRRRNGKELTESEQGDEVNEGQSSDENEESSTTTHKRRR
RRRARGEGVTPGETIEEDGVLTVVKVRPVRVREPRSEGRGFNRKDRPRFERGDRPDRRER
GSFARKRGTVITESEFLARREAVDRSMLVRQIADRTQIAIIEDEVMVEHYVNRNSNISYV
GNIYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDAHGLSDTAPRKIEHVLKSGQSV
LVQVTKDPIGQKGARLTSQISLPGRYLVYVPGGGMSGISRRLPDNERNRLKSILKNLIPE
QAGVIIRTAAEGASETELEADVSRLKDQWQEIDKQAKNSATTAPSLLYSEPDLTVRVIRD
IFNEDFNKMLVQGDQAWDDIQNYIGHIAPELASKIEKWPGPRDLFAENRVEEQLAKAFDR
KVYLPSGGSLVIDRTEAMIVIDINTGKFIGKGGNLEETVTKNNLEAAEEIARQLRLRDMG
GIIVIDFIDMTLESNRELVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLIEAF
STTCESCGGRGIHIHSEPVKKVALEKDMDQRFSKSNKASQDDDSDEETDSADGSTGDDID
TDQNLNSNQVDEPVEQPPATSGRRKGRRAVSTGVISTN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgagcctaaagcaccacgtaaacgcgctgccaaaaaagaggcagagggtgaa
agtaaaaaggtaagtaaaaaatctgctgctattccagttccactatttcaggcagcccca
gtaagtaagtcaccaaaggctgtaaagccagttaaaactgagccagcagatgttgagcaa
caagctaaaggtgacgagagtgaaaaagaggagtttcgtcgcagacgccgtcgtggcgga
agaggcagacgtcgtaacggcaaagagctcactgaaagtgagcaaggtgatgaggttaat
gaagggcagagctctgatgaaaatgaggagagctcaacaactacacataagcgccgcaga
cgtcgcagggcacgtggtgaaggtgtaacacctggtgaaactattgaagaggatggcgta
cttactgtagttaaggtgcgaccggttcgagttcgcgaaccaagaagtgaaggtagaggt
tttaatcgcaaagatcgtccacgttttgaacgtggagatagacccgatcgcagggagcgt
ggatcatttgcgcgaaaacgcggaacggtaattactgaatctgagttcctagcacgtaga
gaagcagttgatagatctatgttggtcaggcaaattgcagatcgtactcagattgcaatt
attgaagatgaggtaatggttgaacattatgtaaaccgaaatagcaatatctcctatgtc
ggaaatatctatttgggtaaggtacaaaatgttttgccatctatggaggcagccttcgtt
gatatcggcaagggcagaaatgcagttttatacgccggtgaagtgaattgggatgcgcat
ggcttatctgataccgcaccacgcaaaattgaacatgtgttaaagagtggtcaatctgta
ttggtacaagtaactaaggatccaatcggacaaaaaggtgctcgattaacaagtcaaata
tctcttcctggtcgatacctggtttatgttcctggtggtggcatgagtgggatttctcgc
agattgccagataatgaacgcaatcgtttgaaatctattttaaagaatctaatcccggag
caagctggggtaattattagaaccgctgctgaaggagcaagtgaaactgagttagaggcg
gatgtaagcaggctaaaagatcagtggcaggagattgataagcaggcaaagaactctgcc
accactgcaccatcacttttatatagtgagccagatctaactgtgcgagttattcgcgat
atctttaatgaagattttaacaaaatgctagttcaaggtgatcaagcttgggatgatatt
caaaattatattggccatatcgcacctgaattggcaagcaagattgaaaagtggccaggc
ccaagagatctatttgccgaaaatcgggtggaggagcagttagcaaaagcctttgatcgt
aaggtctatctgccatctggtggttcgctggtaattgatcgcactgaagcgatgatcgta
attgatatcaacaccggtaaattcattggtaagggtggaaaccttgaagagactgttacg
aaaaataatttagaagcagcggaggagattgcccgccaactacgactgcgggatatgggc
ggaattatcgtaattgactttattgatatgactttggaatcaaatcgagagttagttctc
cgcagattagttgagtgcttaggcagagatcgcactaagcatcaggtggctgaagtaacc
tcacttggcttggttcaaatgactcgtaagcgtgttggtcaaggattaattgaagctttc
tcaacaacttgtgaaagttgtggcggtagaggaattcatattcacagtgagccagttaaa
aaggttgcacttgaaaaagatatggatcaacgattttcaaagagtaataaagcctcacaa
gatgatgattcagatgaggaaacagattcagctgatggctcaactggtgatgatatagat
accgatcaaaacttaaattcaaatcaagttgatgaaccagttgaacaaccaccagctaca
tctggccgccgtaaggggcgtagagcagtcagtactggggtaatttcaaccaactaa
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