Candidatus Nanopelagicus hibericus: B1s21160_04915
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Entry
B1s21160_04915 CDS
T05090
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nhi
Candidatus Nanopelagicus hibericus
Pathway
nhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1s21160_04915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nhi03021
]
B1s21160_04915
03019 Messenger RNA biogenesis [BR:
nhi03019
]
B1s21160_04915
Transcription machinery [BR:
nhi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
B1s21160_04915
Messenger RNA biogenesis [BR:
nhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
B1s21160_04915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Spore_III_AA
HeH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASY13651
UniProt:
A0A249KA41
LinkDB
All DBs
Position
complement(953610..955238)
Genome browser
AA seq
542 aa
AA seq
DB search
MVEKKSTNRTDAVELVDMAVADLKKTAAALGIENATTLKKAELVQSIGDLQAANREAAKN
EREARRMERQNNRNNRNNNNDSAESNSGADNTPNNSSDNQSSGYNNSDRGDNNRRFGNRD
NNRRDRGRDRNRDRNRDRGQREEREIVIGPDDVLLPVGGLLDILDSFAFIRTGGYLPTPN
DVYVSLQQVRKYGLRKGDVITGSVREPREGEQRAKFNALVRVETINGNEPENTKERVEFS
KLVPLYPQERLRLETEPNVLTTRIIDLISPIGKGQRGLIVSPPKAGKTMVLQAIANAITT
NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPADDHTTVAELAIERAKRLVELG
HDVVVLLDSITRLGRAYNIAAPASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTILA
TALIDTGSKMDEVIFEEFKGTGNMELILNRKFADKRIFPAVDVVASGTRKEEILMGTEEL
SIVWRLRRVLHALEPQQALELLLEKMKGTKSNVEFLLQIQKTTTGGDMPTGNGSAARESA
EA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggtagaaaaaaaatcaaccaatcgcacagacgcggttgagttagtggatatggcagta
gcggatcttaaaaaaaccgccgccgcattaggtattgaaaatgccaccacgcttaaaaaa
gcagagttagtccaatctattggcgacctgcaggccgcgaatcgcgaagccgctaaaaat
gaacgagaggctcgtcgtatggaacgacagaacaatcgaaataatcgcaataataataat
gacagcgcagagagtaattctggcgctgataacacaccaaataattcaagtgataaccaa
tcaagtggatataacaactcagatcgcggtgataacaatcgtcgttttggaaaccgcgac
aataaccgaagagatcgtgggcgggatagaaaccgagatcgtaatcgtgaccgtggtcag
cgtgaagagcgtgagattgttatcggcccagatgatgtattgcttccagtaggaggttta
ctagatattttagatagctttgcatttattagaactggcgggtatctgccaaccccaaat
gatgtctacgtttcattgcaacaggtgagaaagtatggcctgcgcaaaggtgatgtaatc
actggttccgttcgtgaacctcgtgagggtgaacagcgtgcaaaatttaatgctctcgtt
cgagttgaaacgataaatggcaacgaaccagaaaatactaaagagcgagttgagttctca
aaattagtaccactttacccacaagaacgcttgcgccttgaaacagagccaaatgttttg
actaccagaattattgatttaatttcaccaattggtaaaggacaacgtggtttaatcgtt
tcaccaccaaaagctggtaaaactatggtgctacaagcaattgcaaatgcaatcactacc
aataatccagagtgtcacttaatggtggtcttagttgatgagcgccctgaagaggttacc
gatatgcaacgatcagtcaagggtgaggtaattgcctctacctttgatcgaccagctgat
gatcacaccacagttgcagagcttgcaattgagcgcgcaaaaagattagttgagttaggt
catgatgtagttgtcttgcttgattcaatcactcgtctgggtcgcgcttataacattgcc
gccccagcctctggtcgaattctctccggtggtgttgattctgcagcgctttatccacca
aagaaattctttggtgctgctcgaaatatcgaaaatggtggctcactaactattttagcc
accgcattgattgatactggatcaaaaatggatgaggttattttcgaagagtttaaaggc
actggaaatatggagctcatccttaaccgtaagtttgcagacaagcgcattttcccagcg
gttgatgtggttgcatctggaacccgtaaagaagagattctgatgggaactgaggagtta
agtattgtttggcgactgcgcagagtgctgcacgcacttgagccacagcaagcacttgaa
ttgttgttggagaagatgaagggaactaaatctaacgttgagttcctactacagattcaa
aagacaactactggtggagatatgccaactggtaatggctcagccgctcgcgagagtgct
gaggcttaa
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