Candidatus Nanopelagicus hibericus: B1s21160_05150
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Entry
B1s21160_05150 CDS
T05090
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nhi
Candidatus Nanopelagicus hibericus
Pathway
nhi03420
Nucleotide excision repair
nhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1s21160_05150
03430 Mismatch repair
B1s21160_05150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhi03400
]
B1s21160_05150
Enzymes [BR:
nhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1s21160_05150
DNA repair and recombination proteins [BR:
nhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1s21160_05150
MMR (mismatch excision repair)
Other MMR factors
B1s21160_05150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_12
YflT
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ASY13693
UniProt:
A0A249KA74
LinkDB
All DBs
Position
complement(1001931..1003574)
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AA seq
547 aa
AA seq
DB search
MAVDNSVILANLDPEQLAVVTAINGPICVIAGAGTGKTRVITHRIAYAINSGVTDPTKVL
ALTFTAKAAGEMRARLRGLGIANATARTFHSAALKQLLYFWPYAFGGQFPSLLTSKSGFI
SQAISRADVAIPASANALREISGEIEWAKVLEISPQDYHEQAVANERLVKLPNNKGENEN
LAMVAQVYEAYESLKKQERGLDFEDVLLLCVGMLEEDRGVRERVRDQYRYFTVDEYQDVS
PLQQRLLNLWLGNRQELCVVGDAAQTIYSFAGATSNFLLNFKNRFPNAQVFRLSRGYRST
PEIINTANKILRQGNLVSDHGDELQSANEHGEKPAVNGFNSSGDEIAYVVAEVKKVIAAG
ADSSEIAILARTNAQLDQVKSALNNAQVLSQIRSGERFFDRVDVRDVMRLIRSASVLPSE
DGDWYADLVAVLRPFGDADYVTAFLRLAKSIQENGGSNMRAFLREIEDRAEQNNPPTLPG
VTLATLHAAKGLEWNQLFLIGVSDGVLPMGNDLNEERRLFYVGVTRAKQRIQITYAGKPS
VFLEQFN
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagataattcagtaatcctggctaatcttgatcccgagcaattagcggtagta
actgcaattaatggccctatttgtgtaattgctggagcaggcacgggaaaaactagagtt
atcacccaccgaattgcatatgcaattaactccggtgtcaccgatcccaccaaagttttg
gcacttacctttactgccaaagctgctggtgagatgcgtgcacggctgcgcggattaggt
attgcaaatgcaactgctagaacatttcactcggcagcacttaagcaacttttatatttt
tggccctacgcctttggcggacaatttccgtcattactcacctcaaaatctggctttatt
agccaagcaatcagcagagcagatgtggcaatcccggcctctgccaacgcacttcgggag
atatcaggtgagattgaatgggcaaaggtgctggagatttcaccgcaggattatcacgag
caggcagttgctaatgagcgtttagttaaattgccaaacaacaaaggtgaaaatgaaaat
ttagccatggttgcgcaggtttatgaagcgtatgaatcattaaaaaagcaggagcgggga
ttagattttgaagatgttctactcctttgtgtgggcatgttagaggaggatcgtggggta
agagagcgagtgcgcgatcagtatcgctatttcaccgttgatgagtaccaagatgtttca
ccattgcaacaaagattgctcaatctgtggctagggaatcgacaggagctgtgcgtagtg
ggggatgcagcccagactatttactcatttgcaggcgccacttcaaacttcttgctgaac
tttaaaaaccgctttccgaacgcccaggtttttagattatcgcgtggctatcgatcaacc
ccagagataataaataccgcaaataagattttacgacaaggcaatttagtaagtgatcat
ggggatgagttgcaatctgctaatgaacatggtgaaaagcctgcagtaaatggctttaac
tccagcggagatgagattgcatatgtggtagctgaggtgaaaaaagttattgcagctgga
gctgattcatctgagattgcgatactggctagaactaacgcccaacttgatcaggttaaa
tcagcactgaataatgcccaggttttgagccagatcagatcaggtgagcgattttttgat
cgggtagatgttagagatgtgatgagattgattaggagcgcttcagtacttccatctgag
gatggagattggtacgccgatctagttgctgtgcttcggccatttggtgatgcggattat
gtgaccgcttttttgcgacttgctaaaagtattcaagaaaatggcggtagcaacatgcgc
gccttcttacgtgagattgaggatcgggctgaacaaaataatccaccaaccctgcctggg
gtaacacttgccactttgcatgcagcaaaaggtttggagtggaatcagctatttttaatt
ggggtctcagatggagtgctaccaatgggtaatgatttaaatgaggagcgcaggctattt
tatgttggggttacccgggcaaagcagcggattcaaattacctacgctggcaaacccagc
gtatttctagagcaatttaattaa
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