Candidatus Nanopelagicus hibericus: B1s21160_05165
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Entry
B1s21160_05165 CDS
T05090
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nhi
Candidatus Nanopelagicus hibericus
Pathway
nhi03420
Nucleotide excision repair
nhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1s21160_05165
03430 Mismatch repair
B1s21160_05165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhi03400
]
B1s21160_05165
Enzymes [BR:
nhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1s21160_05165
DNA repair and recombination proteins [BR:
nhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1s21160_05165
MMR (mismatch excision repair)
Other MMR factors
B1s21160_05165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ASY13695
UniProt:
A0A249KAF4
LinkDB
All DBs
Position
complement(1005343..1008603)
Genome browser
AA seq
1086 aa
AA seq
DB search
MSIKYSAIDIAKKIQSVDPQFKMPTDEQIPIIQSPLAPAVVVAGAGSGKTETMSQRVLYL
VANSIITPDQLLGLTFTRKAAGELSKRIKTRLRQLKSAKLLPDHLDESGLTVSTYHSYAG
RVLAEHAIRIGIDADVDPIGEAAAWQLASQEVARFVGSDLPINGSPNSVIKEVMDLSTQL
AENDKTAAEITEYTEGLLADISQFSDKQTNPIIEFKEELMQRLAILPIVEAFDQRRKEHG
LLTFNDHMSIAARLVKESKSNYGDDIARIEREKYKVVLLDEYQDTSFNQIQFLSNLFGDN
HPVTAVGDPNQAIYGWRSASSETLDTFSQSFNSKATRYELLTTWRNDHAILDLANVVIDK
ICLTSKIAKLKARPNAQIGEVICAVSETQIQEGEAIAAYFSKYWFDKKREELTADQRSTF
AVLVRNRSQIDAIQSAFRELNIPTDVVGVGGLIQTPEVADIIALLKTLTMPDSGTALMRL
LTGPYLNLGARDLMALGGFTKSFARANDYSRGEQLKQALEQNKEVAATADEFATGSIIES
LEQLLILTPAELKKYLRTPEFTQEGLARLRKFALSLRTLRRKLNGSITEAIVEIEQFLSL
DTEVLVRDGWQQGQKNIDRFLDEAARFEKNGGTLLGFLQWLKIAEEAEGGLKPAEVDVRS
DAVQILTVHAAKGAEWDYVAIPGLAEKSFPNSGKKSDNWIRNAGSIPVSMRGDNQQLPSI
NFANFSTNKELKTGIEIFGDRWNDRKNMEEMRLAYVAITRAKQGLILTTSHFRSGANIVA
PSELFTLFAGALTTIKGGVVLADTPPAEGGNPIKENPTTGVWPEEKSEVIKLRKIADLVD
QAKPFTKDEMAKLLAKSQDNLAADLIQDMQGIITEIANKSEQLSVTLPSRLSVSTLLYLA
NDPQSLALRLRRPMPNHIDKYARRGTDFHLWLENYFKHPALISMDDLFNSGSAESAAQDE
PLEKLQTAWLASDWANQSPVDVEVGFETMIESTLIRGRIDAVYQKSSNHYEVVDWKTGKV
KSGDDLANAAIQLAMYRLAYAKLKNIPIENVSAAFHYVADNETVRVADILNEKELVDLIS
QIPIEI
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaaatactcagcaattgatattgccaagaaaatccaatcagttgatccgcaa
tttaagatgccaaccgatgagcagataccaataattcaatcaccacttgcccctgcagtt
gtagttgcgggtgctggctctggaaaaactgagacgatgagccagcgtgttttatatctt
gtcgcaaactcaataattaccccagatcaattacttggccttacctttacccgcaaagct
gccggtgagttatccaaacgaatcaaaactcgcctgcgccaattaaaaagtgcaaaatta
ctaccagatcatctagatgaatctggcttaacagtttccacctatcactcctatgctggt
cgagtattagccgagcacgcgatccgaattggcatagatgctgatgtagatccaattggt
gaggcagctgcttggcaacttgcatcacaagaggtagcaagatttgtcggaagtgatctg
ccaattaatggctcaccaaattcagtaattaaagaggtgatggatttatctactcagctg
gcagaaaatgacaaaaccgcagcagagattactgaatataccgaagggctactggcggat
atttcacaattttctgataaacaaactaatccgataattgagttcaaagaggagttgatg
caacggctggcaattttgccaattgtagaagcatttgatcaacgtcgaaaagagcacggt
ttactgacctttaatgatcacatgtctattgcggcaaggttagtaaaagaaagtaaatct
aattatggcgatgatattgccagaattgaacgagagaaatataaagttgtccttcttgat
gagtaccaagatacttcttttaatcaaattcaatttctatccaatttatttggagataac
cacccagtcacagcagttggggatccaaatcaggctatctatggttggcgcagtgccagc
tctgaaaccttagatactttttcacaatcattcaacagtaaagcaacgagatatgagttg
cttactacttggcgaaatgaccacgcaatcttggatctagcaaatgtggtaattgataag
atttgcctaacgagtaaaattgcaaaattgaaagcccgaccaaatgctcaaatcggtgag
gttatctgcgcagtatctgaaacccagattcaagagggtgaagcgattgctgcttatttt
tcaaagtactggtttgataaaaaacgtgaagagctcaccgctgatcaaagatcaaccttt
gcagtattggtccgaaatcgatcccaaatagatgcgatccaatccgcttttcgagaatta
aatattcccacagatgtagtcggcgtcgggggtttaattcaaactccagaggtggctgac
attattgccttactcaagacattaaccatgccagattcgggcaccgctttaatgcggtta
ttaactggtccctatttaaatttaggtgccagagatttaatggcacttggtggatttact
aaatcatttgcccgggcaaatgattactctcggggtgagcaattaaaacaggcgttagag
caaaacaaggaggtggctgctacagcagatgagtttgcaactggctcaattattgaatca
cttgagcagttgttgattttgactcccgcagagctaaagaaatatcttcgaaccccagaa
tttacgcaagagggtttagcaaggcttagaaaatttgcgctctcacttcgtaccctgcgc
cgtaaattgaatggttcaattaccgaagctattgtggagatagagcagtttttatcctta
gatactgaagttttggtaagagatggctggcagcaagggcaaaaaaacattgatcgcttt
cttgatgaggctgctagatttgaaaaaaatggtggcaccttgttgggctttctgcaatgg
ctaaaaattgctgaagaagcagagggtggattaaagccagctgaggttgatgtcagaagt
gatgcggttcagatattgactgttcatgcggcaaagggtgcagagtgggattatgtagcg
atcccaggtttggctgaaaaaagtttcccaaactctggaaaaaaatctgataactggata
agaaatgctggcagcatccctgtcagtatgcgtggtgacaaccagcaattgccctccatt
aattttgctaacttttccacaaacaaagagttaaaaactggcatcgaaatatttggtgat
cgatggaatgaccgcaaaaatatggaggagatgcgccttgcctatgtggcaattactaga
gcaaagcaaggattaattctcaccacctcacactttagaagtggcgccaatattgttgca
ccaagtgaattatttactctatttgcaggtgcattaacaactataaaaggtggagtagtt
ctggctgataccccacctgcagagggaggaaatccaatcaaagaaaatccaactaccgga
gtttggccggaggaaaaaagtgaggtaattaagctacgaaaaattgctgatttagttgac
caagccaaaccctttaccaaagatgagatggcgaaattactagcaaaatcgcaagataat
ttagcagcagatctaattcaagatatgcaagggattatcaccgagattgcaaataaaagt
gaacaactgtcagtaactctaccaagcagattatcagtctccaccttgctgtatttagca
aatgacccacaatcacttgcacttcgtctacgccggccaatgccaaatcacatagataaa
tatgccaggcgcggaactgattttcacctttggcttgaaaactacttcaaacacccagct
ttaatatcaatggatgatttatttaattctggtagcgcagaatcagcagcgcaggatgaa
ccactagagaaattacaaaccgcatggctagcaagtgattgggctaatcaaagcccagtt
gatgtggaggttggctttgagacaatgattgaaagcaccctcatcagaggaaggattgat
gcggtttatcagaaaagctccaaccattatgaggttgtagattggaagactggcaaggtt
aaatcaggtgatgacttggcaaatgcagctattcagcttgctatgtatcgcctggcttat
gccaagctaaagaatattcctatcgaaaatgtcagtgcagcttttcattatgtagcagat
aatgagacggttagagtggcagacattttgaatgagaaagagctagttgatttaattagt
caaatccctattgaaatttaa
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