Candidatus Nanopelagicus hibericus: B1s21160_05295
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Entry
B1s21160_05295 CDS
T05090
Name
(GenBank) transcription-repair coupling factor (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nhi
Candidatus Nanopelagicus hibericus
Pathway
nhi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1s21160_05295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhi03400
]
B1s21160_05295
Enzymes [BR:
nhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1s21160_05295
DNA repair and recombination proteins [BR:
nhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B1s21160_05295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
RecG_dom3_C
PfNDH2_hel_ins
Motif
Other DBs
NCBI-ProteinID:
ASY13717
UniProt:
A0A249KAA2
LinkDB
All DBs
Position
complement(1032144..1035632)
Genome browser
AA seq
1162 aa
AA seq
DB search
MKNLLSHLSVPIKNYFNQPGDLVAPAAAHSLIFTNLKPPVLLVTKSTRAAQELANEIIAF
EGDQSVVNFPAWETLPHERLSPKSDTVTMRFKALNKMRNQECKFIVCSIRALLQPIIDND
LATSQIKVSKALTIEMAELIAKLSKLGFVRSDLVERRGDFAVRGGILDLFPADQEHPIRI
DFFGDEIDEISYFAVSDQRSLEKVSTEILIYPCRELLIDDGVKDKAKKLAEKFPQINQYT
DKLIAGITFEGMESLAAGVVDDFKSILDYLPKNCQIILIDEPRIKSRAKDLIKTNAEFLS
AAWSNLAWSQEIKVETPIDLSQELGRGGFYELDQIKDIANKHNFNLRKLNLYSSTPEDIS
LDFLTEITTYGNKYEVAIADIKQWHSDKYQVIFTSSANGTLKRFAELLSSADLPNQIIAN
DQVVENTHLITLIRSDIKHGFISEEFKTVLITDKDISGQRSADKDLARMPSRRKKAIDPL
ELKAGEYVVHEQHGVGKYLELITRSIGGISREYLVIEYAASKRGQPADKLFVPTDILEQV
TKYVGGEAPALHRIGGADWQNSKRRARKAIKQIAAELIRLYAARMSSPGYAFSADTTWQK
ELEDNFAFVETIDQQATIDEVKRDMEKPNPMDRIVCGDVGYGKTEIAVRAAFKAVQDSKQ
VAILVPTTLLVQQHMNTFSDRYAGFPIKIAALSRFNTPAESKKVIAEIKTGVVDVVIGTH
RLLSKDVEFANLGLLVIDEEQRFGVEHKEELKKARTNVDVLAMSATPIPRTLEMAITGIR
EMSNITTPPEERHPVLTYVGAFDEKQVSAAINRELLRDGQIFYIHNRVESIEAVGERIKK
LIPGIKIGIAHGQMNERVLEEVIIAFWTRQFDLLLCTTIIESGIDIPNANTLIVDRSDLF
GLSQLHQLRGRVGRSSERAYAYFFYPADKPITQLAHDRLTTIATNTDLGAGMAVALKDLE
IRGAGNLLGGEQSGHIAEVGFDLYMRMVADAVDEFKSDYFVQKPKNIDCKVELPVNAHLP
VEYIESERLRLDLYRRIAEAQSDEVIAEIRAEMLDRFGELPAAAAELLKVAALRLFAKSL
GITDIAIAGKQLRLTPITLAESAQIKLSRLYPGSIYKMSSSTLLVARVTAPNWIEGGEVG
DTSTLAWVDSVLRNFIQPIVEK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatctactctcgcacctttctgtgccaattaaaaattacttcaatcaacctggt
gatttagtagcaccagctgcagcgcactcactgatatttacaaacttaaagccgccagtt
ttgttggtgacaaaatcaactagggcggcgcaagagttagcaaatgaaattattgcattt
gaaggtgatcaatctgtggttaatttcccagcctgggagacattgccgcacgagcggctt
agtccaaaaagtgacacggtaacaatgagatttaaagcattgaataaaatgcgaaatcaa
gagtgcaaatttattgtttgttcaattcgggcattactacagccaattattgataatgat
ctagcaacatcacagattaaagtttctaaagctctcacgattgagatggcagagttaatt
gccaaattaagcaagcttggctttgtgcgctctgatctcgttgagcgtcgtggtgatttt
gcagtccgtggcggcatcctagatttattcccagcagatcaagagcatccaattcgaatt
gatttttttggtgatgagatcgatgagatctcctactttgcggtgtcagatcaaagatca
ttagaaaaagtatccactgagatattgatctatccctgtcgggagttgttaattgatgat
ggggtgaaggacaaagcaaaaaagttggctgaaaaatttcctcaaataaaccagtacacc
gacaagctgattgccggcatcacctttgaggggatggaatcactcgccgcaggtgtagtc
gatgatttcaaatccattttggattatctgcccaaaaattgccaaataattttaattgat
gagcccagaatcaaatcccgggcgaaggatttaattaaaaccaatgcggagtttttatct
gccgcttggagcaacctggcttggtcgcaggagataaaagttgagaccccgattgattta
agtcaggagctaggcaggggtggcttttatgagttggatcaaataaaagatatagccaat
aaacataatttcaacctgcgaaagctaaatctttactcctctacgccagaggatataagc
cttgattttctgacagaaattactacctatggtaataagtatgaagtagctatcgctgat
atcaagcaatggcatagtgataagtaccaggtcattttcacctcatcagcaaatggcacc
ttaaaaagatttgcagagttgttaagtagcgccgatctaccaaatcagataattgctaat
gatcaggtggtagaaaatactcacttaataaccttaattagatctgatatcaagcatgga
tttattagtgaagagtttaaaactgtgttaataaccgataaggatatttcaggtcaacgc
tctgctgataaggatttagcccggatgccctctcgacgcaaaaaagcgattgatccatta
gagcttaaggcgggtgagtatgtggtgcatgaacagcatggggttggtaaatacttagag
ttaattactagatcaattggtggaatctcacgagagtacttagttattgagtacgctgct
tcaaaacgtggtcagcctgcagataagttatttgtccccaccgatattttagaacaggta
acaaagtatgttggtggtgaggcacccgcactccaccgaattggtggtgctgattggcaa
aacagtaaacgacgcgcgcgaaaggcaattaaacaaatagcagcggagttaatcaggctt
tacgccgcccgaatgagctctcctggctatgcattctcagctgataccacttggcaaaaa
gagctagaggataactttgcatttgtggagacaattgatcagcaagcaactattgatgaa
gttaagcgggatatggaaaaaccaaatccaatggatcgaattgtttgtggtgatgtgggc
tatggaaaaactgagattgcggtaagggctgcattcaaagcggtgcaagatagcaagcag
gtggcaatattggtaccaactactttactggtgcagcaacatatgaatactttttcagat
cgctacgccggctttccaataaaaatcgctgccctttcaagatttaatacgccagcagag
agtaaaaaagttatagcagaaattaaaactggggtggttgatgtagtaattggcacccat
cgacttttatctaaagatgttgagtttgcaaacttaggattactagttattgatgaggag
caacgatttggggttgaacataaagaggagctgaaaaaagctagaacaaatgtggatgta
ttggcaatgtcggcaacaccaattccgagaactttagagatggcaataactgggataaga
gagatgtctaatatcaccactccaccggaggagcgccacccagttttaacttacgtgggt
gcttttgatgaaaagcaggtgagcgctgcgatcaaccgtgaactattacgtgatggacaa
atattttatattcacaatcgggtggaaagtattgaggcggttggcgagaggatcaagaaa
ttaattcctggcataaaaattggtatcgctcatggtcaaatgaatgagcgggtgctggag
gaggtaattattgccttttggactcggcaatttgatttgcttctttgcaccaccattatt
gaaagtggtattgatattccaaatgccaacaccttgattgtggatcgctctgatttattt
ggcctttcacaattgcatcaattacgtggccgggtgggccgaagtagtgaacgggcttac
gcttattttttctatccagctgataaaccaattacgcaattagctcatgaccgcttgacc
acaattgctaccaataccgatcttggcgcaggtatggcggtggcattgaaggatttagag
attaggggtgctggaaatttattaggtggtgagcaatcaggacatattgcagaggttggc
tttgatttatatatgcggatggtggcagatgcggttgatgagtttaagagtgattacttt
gtacagaagccaaaaaatattgattgcaaggtggagttaccagtaaatgcacatctacca
gttgagtacatcgaatcagagcgattgcggctagatctttatcgtcgaattgctgaagca
caaagtgatgaggtgattgctgagatcagagccgagatgttagatcgctttggcgagcta
ccagcagcagcggcagagctacttaaagtggcagcactgagattatttgctaaatcttta
ggaataacggatattgcgatcgctggtaaacagttgcggctcacacccatcacacttgct
gagtcagcacagataaaactcagtaggctttatcccggctcaatttataaaatgagcagc
tccaccctcttagttgcaagagtcactgcgcctaattggatagaaggtggtgaggtagga
gatacttcaacccttgcgtgggtcgattcagttctacgtaattttattcaaccgatagta
gaaaaatga
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integrated database retrieval system
