Nitrosococcus halophilus: Nhal_0554
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Entry
Nhal_0554 CDS
T01198
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Nhal_0554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhl03400
]
Nhal_0554
Enzymes [BR:
nhl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Nhal_0554
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Nhal_0554
DNA repair and recombination proteins [BR:
nhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Nhal_0554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ADE13738
UniProt:
D5BW88
LinkDB
All DBs
Position
complement(569756..570571)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETVRCGIEPHLVGCQVRTVIVREPRLRWPVPLSLSENLTGQSFLTVQRRGKYL
LLNCPRGTVLLHLGMSGSLRLVPSNLPPKKHDHLDIVLSNGRCLRFNDPRRFGSVLWTQE
NPWRHPLLKTLGPEPLDPLFDGPYLFKRSRHRQAPVKVFIMNPRVVVGIGNIYASEALFQ
AGIHPRRAAGRISLARYQRLAEAIKTVLYQAIQAGGTTLRDFVASDGKPGYFSHQLQIYG
RTAHPCPTCGNPIHLDHIGQRASYYCTQCQH
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaattgccggaggtcgagaccgttcgttgcggcattgagccccacctggtaggc
tgccaagtacgcacagtcattgtccgtgaaccgcgcttgcggtggcccgtacccctatcc
ttatccgaaaatcttacgggccaatctttcttaaccgtgcaacgccgcggtaaatacctc
cttctgaactgtccacgaggcaccgtgctcctccaccttggcatgtcgggcagtctccgc
ctggtaccaagcaatttaccacccaagaaacatgaccatctcgatatcgtattgagcaat
ggccgctgcttacgcttcaatgatccccgccgatttggatcagtcctttggacccaggag
aatccctggcgccaccccctcttgaaaaccctagggccggaacccctggatccgttgttt
gatggcccctatctttttaaacgatctcgtcatcggcaagccccagtcaaagtttttatc
atgaaccctcgggtagtggtcggcattggcaatatctatgctagcgaggcactgttccaa
gcggggatccatccccgacgggcagcgggccgtatcagtttggcccgctaccaacgacta
gccgaagctatcaaaacggtgttatatcaggccatccaggcaggcggaacaacgctgcgg
gattttgtagccagcgatggcaaacccggctattttagccaccaactccaaatctatggc
cgtacggcccatccttgtcctacttgtgggaatcccatccaccttgatcatattggtcaa
cgggccagttactactgcacccaatgccagcattga
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