Nitrosococcus halophilus: Nhal_0598
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Entry
Nhal_0598 CDS
T01198
Name
(GenBank) sigma-54 factor interaction domain-containing protein
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Nhal_0598
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
nhl02022
]
Nhal_0598
02035 Bacterial motility proteins [BR:
nhl02035
]
Nhal_0598
Two-component system [BR:
nhl02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
Nhal_0598
Bacterial motility proteins [BR:
nhl02035
]
Pilus system
Twitching motility proteins
Nhal_0598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
HTH_28
AAA_5
HTH_30
HTH_1
AAA
HTH_20
HTH_50
AAA_22
AAA_16
VpsR
Motif
Other DBs
NCBI-ProteinID:
ADE13782
UniProt:
D5BWD2
LinkDB
All DBs
Position
611408..612742
Genome browser
AA seq
444 aa
AA seq
DB search
MKEHPLALIVDDEPDILELLELTLAPMGVACHKAVDLAEARQYLQQHSFDLCLTDMRLPD
GDGIELVRLISQHFPETPVAVITAHGSVETAVEALKSGAFDFISKPVDLQALRNLTNAAL
RLPLRYPQRERRTRYRLLGESAAMRAVRSKIAKLARSQAPVYISGESGTGKELVARLIHE
QGPRLEAPFVPVNCGAIPNELMESEFFGHKKGSFTGATHDKRGLFQTAGGGTLFLDEVAD
LPLPMQVKLLRAIQEKSVRPIGSEKEISVDVRILCATHKDLAALVKEGSFRQDLFYRLNV
IELPVPPLRQRASDIPQLAEHILSKLAGINQITCPKLTSDALEALQVYPFPGNVRELENT
LERAMTLCDSEIIEAKDLHLPKAEPPSTPTSLPVGSLEECLEGVERRAILQALERTHYNK
TAAAKLLGITFRALRYRLKKLELE
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacatcccttggccctcattgtggacgatgagccggatattctagagttactt
gagcttaccctggcgcctatgggcgtggcttgtcataaggctgtcgatcttgccgaagcc
cgccaatatttgcagcagcattccttcgatctgtgcttgaccgatatgcgccttccggat
ggggatggtattgagttggtcaggctcattagccagcatttcccggagacaccggtcgcg
gtgattacggcccatggcagtgtggagaccgcggttgaagccctgaagtcgggcgctttt
gattttatctccaaaccggtggatttgcaggcgcttcgcaatctgaccaacgcagccctt
agactcccgcttcgttatccccaaagggagcggcggacccgctaccggttactgggagaa
tcagccgccatgcgggcggtacgctccaaaatcgccaagctggcacggagccaagcgccg
gtctacattagcggtgaatcgggcaccggcaaggagctggtcgccaggctcatccatgag
caagggccccgcttggaagcgccctttgtcccggtaaactgtggcgctatccccaatgag
ttgatggaaagcgagtttttcggccataaaaagggcagttttaccggcgccacccatgat
aagcgagggctgtttcaaaccgccggtggagggaccctgtttttggatgaagtggccgac
ttacctttacccatgcaggtcaaacttttgcgggctatccaggagaaaagcgtgcggcct
attggcagcgagaaagaaatttccgtggatgtgcgtattctctgtgctacccacaaggac
ttagccgccttagtaaaggaaggcagcttccgccaggatctcttctaccggcttaatgtt
attgagttgccggttccgcccttaagacaacgggccagtgatattccccagttggccgag
catattttgagtaaactcgccgggattaaccaaatcacttgtcctaagttgacttctgac
gccctggaggcgctacaagtttaccctttcccagggaatgtccgcgagttggaaaacacc
ctcgagcgggccatgaccttgtgtgactccgagatcatagaggccaaagatttgcacttg
cctaaggcggaaccccccagtaccccgacatcactgccggtaggttcgttagaagagtgt
ttggagggcgtggaaaggcgggccattctccaggctttggaacgaacccattacaacaag
accgctgccgccaagctccttggcattaccttccgggctttgcgttatcgtttaaaaaaa
ctggagttggagtaa
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