Nitrosococcus halophilus: Nhal_1884
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Entry
Nhal_1884 CDS
T01198
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nhl
Nitrosococcus halophilus
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nhl03016
]
Nhal_1884
Enzymes [BR:
nhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nhal_1884
Transfer RNA biogenesis [BR:
nhl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nhal_1884
Prokaryotic type
tRNA splicing ligases
Nhal_1884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
TarS_linker
Motif
Other DBs
NCBI-ProteinID:
ADE14997
UniProt:
D5C3M5
LinkDB
All DBs
Position
1936845..1938275
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AA seq
476 aa
AA seq
DB search
MDISRLTRISAYAWRIDPHGEMRVPSIIYANEDLIQAMDEKVYEQVRNVATLPGIVEASF
AMPDAHWGYGFPIGGVAAFDPAQGGVISAGGVGFDISCGVRTLHTGLRREQIEAVKSSLA
DRLYHQIPAGVGSRGAIHLNDREMNAMLAGGARWAVERGYGRPEDLARIEEQGCMPGAVP
DEVSAKAKKRQQDEMGTLGSGNHYLEVQHVVEVYDPETAAAFGLYGGDMVVTIHCGSRGL
GHQIGTEFLKDMAIAAPRYGITLPDRELACAPIHSPLGETYLGAMRAGINCALANRQILT
HLTRQVFAEILPEANLTLLYDVSHNTCKVEEHVIDGQRKRLFVHRKGATRAYGPGHPDLP
EALREVGQPVLIGGSMGTSSHILVGTKETEALAFSSACHGAGRSMSRHEAKRRWYGREVV
DRLAKRGILIRSASYRGVAEEAPDAYKDVDAVVDAAHESGLARKVARLEPLICIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggatattagccgcttaactcgaatttcagcgtatgcgtggcgtatcgaccctcacggg
gagatgcgtgtgcctagcatcatctatgccaacgaagacttaatccaggccatggatgag
aaggtctatgagcaggtgcggaacgtggctaccttgccgggcattgtggaagcgagcttt
gctatgcctgatgcccattggggctatggatttcctatcggcggtgtagcggcctttgac
ccggcgcaaggaggagtgatctcggcaggtggtgtgggttttgatatttcctgtggagtc
cgtaccctccacacggggctccgccgggagcagattgaggcggttaaaagctccttggct
gaccggctgtaccatcagattcctgccggcgtggggagtaggggcgctatccatctcaac
gaccgggagatgaatgccatgctggccgggggagcccggtgggcggtggagcggggctac
ggccgtcccgaggatttggcgcgcatcgaagaacagggctgcatgccgggagcggtgccc
gatgaagtctcggccaaggccaagaagcgccagcaggatgaaatggggaccctaggctca
ggcaaccattacctggaagttcagcatgtggtcgaagtctatgatccagagacagccgct
gcctttggcctttatgggggggacatggtggtcactatccattgcggatcgcgggggcta
gggcaccaaatcggcaccgaatttttgaaggatatggccatcgccgcgcctcgttatggg
attacgttgccggatcgagaattggcctgtgcacccatccattctcccttgggggagacc
tatttgggggccatgcgtgccgggattaattgcgctctcgctaatcgccagatcctgacc
catctgacccggcaagtctttgcagaaatcctgccggaggcgaatcttaccctcttatat
gatgtgtctcataacacctgcaaagtggaagagcatgtcattgacggccagcgcaaacgg
ctttttgtccatcgcaagggcgccacgcgagcctacgggccggggcatccggatttgccc
gaggccctgcgagaggtgggacagccggtccttatcggaggctccatgggtactagttcc
cacattttggtagggacaaaggagaccgaagcgctggccttcagttccgcttgccacggg
gccgggcggagtatgagtcgtcatgaggctaaacgccgttggtacggtcgggaagtggtg
gaccggctcgcgaagcgaggcattcttatccgaagtgcttcttaccggggcgtggcggag
gaagccccggatgcctataaggatgtggatgcggttgtagatgcagcccatgaatccggt
ttggcccgtaaggtggcccgtcttgagcctctcatttgtatcaaggggtag
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