Nitrosococcus halophilus: Nhal_2379
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Entry
Nhal_2379 CDS
T01198
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Nhal_2379
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nhl03021
]
Nhal_2379
03400 DNA repair and recombination proteins [BR:
nhl03400
]
Nhal_2379
Enzymes [BR:
nhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Nhal_2379
Transcription machinery [BR:
nhl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Nhal_2379
DNA repair and recombination proteins [BR:
nhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Nhal_2379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
SF3a60_Prp9_C
Motif
Other DBs
NCBI-ProteinID:
ADE15467
UniProt:
D5BVN8
LinkDB
All DBs
Position
2453685..2457896
Genome browser
AA seq
1403 aa
AA seq
DB search
MRDLLNLLKQQNQIEEFDSIRIGLASPDMIRAWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRISLLLDMTLRDIERVLYFEASVVIEPGMTPLERGQLLADEAYLQAVEEYGDEFDARM
GAEAVQEMLKTLDLKGEATKLREEITNTNSDTKIKKLSKRLKLMEAFIDSGNRPEWMILE
VLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKLPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFGKLERAGLATTIKAAKKLVEREGPEVWDVLEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIGPTQDVVLGLYYMTSERVNAKGEGMLFADVNEVRRAYETA
AVDLHAKVSVRITETDLSKPEGERETTRIVRTTVGRALLSELLPPGLPFELVDRNMTKRE
ISKLVNICYRRLGLKTTVVFADRLMYLGFRQATLSGISIGVDDMVVPEEKQPILARAEEE
VKEIEEQYASGLVTNGERYNKVVDIWSHTNDQVAKAMMERLGSEEVEDAEGKVVKQQTFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGTTRGISMTPLVEGGDVVEPLRERVL
GRVLALDVFVPGSNEVAIPAGTLLDESWVDHLETLGIDAVKVRSPITCETRYGVCAGCYG
RDLGRGHRINVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTVTTNSIEIKYKGSIRL
HNVKIVQHESGKYVAVSRSGEVHVVDEQGRDRERYKIPYGAELSVGDGDVVEPGQVVATW
DPHTHPVITEVAGKVRLQDFVEGTTVERQVDEVTGLTSLTVLDPKQRGAAARELRPMVKL
VDETGSDLCIAGTDIPAHYYLPAGAIVSAEDATMVGVGDVLARLPQESSKTRDITGGLPR
VADLFEARKPKDPAVLAEISGTVSFGKETKGKQRLIITGSDGERHEELIPKWRQVNVFEG
EHVEKGEVIVDGPPAPHDILRLRGVEELTQYIVNEVQDVYRLQGVKINDKHIEVIVCQML
RKVEIIEPGDTSFLKGEQVDKARLLEENEKVEKDGKLSARFEPVLLGITKASLATESFIS
AASFQETTRVLTEAAVTGKSDELRGLKENVIVGRLIPAGTGLAYHSERRRKRHMLEQSEA
LTGEASSSRYGEGEISESGAATA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgagagatttactgaatttgcttaagcagcaaaaccagatcgaggagttcgattccata
cgcattggtctggcatctcccgatatgattcgggcctggtcgtacggggaggtcaaaaag
cccgaaaccatcaactatcggacttttaagccggagcgtgatgggcttttttgcgctaag
atttttggtccagttaaagactacgagtgtttatgcggcaaatataagcgtctcaaacat
cggggcgtgatttgcgagaaatgtggagtagaggtgactctggccaaggttcgccgggag
cgtatggggcatattgaactggccagtccagtggcccatatttggttcctaaagtccctg
ccttcgcggatcagtttgcttttagatatgacactccgcgatatagagcgggttctctac
tttgaagcttctgtagttatcgagccaggcatgactccattggagcgggggcagctctta
gcggatgaggcctatcttcaagctgttgaagagtatggcgatgagttcgatgcccgtatg
ggagcagaagcggtccaggaaatgctaaaaacccttgatctcaagggagaggccacaaag
ctgcgcgaggagattaccaacactaactctgacaccaagattaaaaaacttagcaagcgg
cttaaacttatggaagcgtttatcgattcgggtaatcgccccgaatggatgattctagaa
gtgctcccggttttgccgcctgatttacggccgctagtgcctttggaaggagggcgtttt
gccacctctgatcttaatgatctataccggcgggtgattaatcgaaataatcgtcttaag
cgattattagatctgaatgcgccagatatcattgtgcgtaatgagaaacgcatgcttcag
gagtcagtggatgctctcttggacaacgggcgccgcggccgagcgatcacagggaccaac
aagctgcctttaaaatcgctagccgatatgatcaaaggcaagcagggacggtttcggcaa
aatctactgggtaagcgggtggattattctggtcgctctgtcattgtggtgggtccaacc
cttaagctgcatcagtgtggtttgcccaagaagatggcactggaactttttaaacctttc
atctttggtaagttggagcgagctgggcttgccaccacgattaaggcagcaaaaaaactg
gtagagcgggaaggtcctgaggtatgggacgtgttagaggaggttatccgcgagcacccg
gttatgcttaatcgggcccctaccttgcaccgccttggcattcaggctttcgagccggtg
ctcattgaaggtaaggcgattcagctccaccccttggtttgtgtggcttttaatgctgac
tttgatggcgaccaaatggcggtccatgtaccgctgtccttggaggcccagctggaggcc
cgcgccctcatgatgtccacaaacaacattctgtcgccagctaatggggagcccattatt
ggtcccacccaggatgtagtcttaggactgtactacatgacctctgagcgggtgaatgcc
aagggtgaggggatgctcttcgccgatgtcaatgaggtacggcgtgcctatgagacagcg
gcggttgatctccatgcaaaagtttccgtacgtattaccgaaacggatctctctaaacct
gaaggtgaacgcgaaacgacccgtatcgtgaggactacagtgggacgagcactgctctca
gagctcttgccgccagggttgcccttcgagttagtcgataggaatatgactaaaagggag
atttccaagctggtcaatatctgttatcggcgcctaggccttaagaccacagtggtgttt
gctgatcgcctgatgtatctcggcttccggcaagcgactctgagtggtatttccataggt
gttgatgacatggtggtgccagaggaaaagcaacccattcttgctagggcggaagaagaa
gttaaggaaattgaggaacaatacgcctcaggcttggttaccaatggcgagcggtataat
aaagtcgtggatatttggtcccataccaatgaccaggtagccaaggccatgatggagcgg
ttagggagtgaagaggtggaggacgcagagggtaaagtcgtcaaacagcaaacctttaac
tccatctatatgatggccgattctggggcccggggatcggctgcccagatccgtcagctt
gcaggtatgcggggtttgatggctaagcctgacggctcgatcattgaaactccaattacg
gctaatttccgtgaagggctagatgtcctgcaatactttatctctacccatggggctcgt
aaaggtttggctgacacagccctaaaaacggctaattctggatacttgactcggcgctta
gtggacgtcgcccaggatttggtcatcacagaagatgactgtggtaccacccgtgggatt
agcatgactcctctggtagaggggggtgacgttgtagagccgctacgagagcgggtgcta
ggtcgggtattggcccttgatgtttttgtgccagggagcaatgaagtggcgatacccgcc
ggcaccctgctggatgaatcctgggtcgatcatcttgaaaccctaggcatcgatgcggtg
aaggtccgttcacctattacctgtgagacccgttatggggtctgtgcgggttgctatggg
cgagatctggggcgtggccaccgtatcaatgtgggtgaggccgttggggtcattgcggct
caatccatcggtgagccaggtacgcagctgactatgcgcactttccatattggcggcgca
gcatcccgaacagtcaccaccaatagcattgagattaagtataagggcagtatccggttg
cataatgtcaagatagttcagcatgaaagtggtaaatatgttgctgtctctcgctccggg
gaagtccatgtggtggatgagcaggggcgtgatcgggaacgttataagattccctatggc
gctgagctttcggtgggagatggcgatgtggtggaaccgggtcaagtagtggccacctgg
gatccccatactcatcccgtgattacagaagtggcgggcaaagtcagacttcaggatttt
gtggaaggcaccaccgtggaacgccaggttgatgaggtcactggcttgactagcctcacc
gtgcttgatcctaagcaacgaggcgccgctgctagggaattgcgcccgatggttaagcta
gttgatgaaacaggaagtgacttatgcattgcaggaacggatatccctgcccattattat
ttgccagcaggggctatcgtttcggcagaggatgctaccatggtcggtgtgggtgatgtg
ctagcgcgattgccccaagaatccagtaagacccgcgatattacgggtggtttgccgagg
gtggccgacctattcgaggcacgtaaaccgaaagaccccgcggtccttgccgaaatttcg
gggaccgtaagttttggtaaggaaactaagggtaaacagcggcttattatcactggaagc
gatggcgaacggcatgaagaattgatccccaagtggcgtcaagtcaatgtattcgaaggt
gaacacgttgaaaaaggtgaagtgatcgttgatgggccgcctgcgccccatgacattcta
cgtctacggggtgtggaagagttaactcaatatattgttaacgaagtccaggatgtatat
cgcttacaaggggtgaaaatcaatgacaagcacattgaagtcattgtttgccaaatgctt
cgcaaggtggaaataatagaacctggagataccagctttcttaagggtgagcaggttgat
aaggcgagattgttggaggaaaatgaaaaggtagagaaagatggcaaactatctgcccgt
tttgagccggtgcttcttggtatcaccaaggcctcactagcgacagaatctttcatctcg
gccgcctccttccaagaaactacgcgtgtgctcacggaagcagccgtaacaggcaagagc
gatgagttgcgcggattgaaggaaaatgtgattgtgggccgcttgattcctgcggggacg
ggattagcttatcactctgagcggcgtcgcaagcggcatatgttagagcaatcagaagcc
ctaaccggggaagcaagttcttctcgttatggggagggtgaaatttctgagtcaggtgct
gcgactgcttga
DBGET
integrated database retrieval system
