Nitrosococcus halophilus: Nhal_2955
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Entry
Nhal_2955 CDS
T01198
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nhl
Nitrosococcus halophilus
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nhl03016
]
Nhal_2955
Enzymes [BR:
nhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nhal_2955
Transfer RNA biogenesis [BR:
nhl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nhal_2955
Prokaryotic type
tRNA splicing ligases
Nhal_2955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADE16015
UniProt:
D5BYM7
LinkDB
All DBs
Position
complement(3028335..3029795)
Genome browser
AA seq
486 aa
AA seq
DB search
MATLNQLERVTETIWELPLSFKAGMRVPARIYGTEKIIRAMDETVYDQISNVACLPGITQ
YAFCMPDGHFGYGFPIGGVAAMDVDNGGVISPGGIGFDINCGMRLIKTHLSYKEVKPHLK
TLVDRLFKQIPAGVGSSGLLKVSRSEFRQVCQQGARWCVQQGLGWEEDLERTEEGGLIGG
ADPAKISERAIDRGLNQLGTLGSGNHYLEIQVIHPENIYDPALARFFGLDLPEQVVIMFH
CGSRGFGHQVATDYLQRFLKVMTSKYGLEVRDRELACAPFHSPEGQDYFAAMKCALNMSF
ANRQVILHRVREVFSEVLGRSAEDLGMHMIYDVAHNTAKLEPHQVNGKQRTLLVHRKGAT
RAFGPGRPELPELYRQVGQPVIIGGSMETGSYLLIGTPDGAQTFFSTAHGSGRTMSRRKA
RKQWQGEALLSQLEERGIYIRSVSKRGVAEEAGGAYKDIDEVVTATDLAGLSKPVVRFIP
IGNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcaactctcaatcagctagagcgggtcacggagaccatttgggaacttcctctttcc
tttaaagcgggaatgcgggtcccggcccgaatctatggcacggaaaagattatccgcgcc
atggatgagaccgtgtatgaccagatcagcaatgtggcctgtcttccgggcatcacccaa
tacgccttctgtatgcctgatgggcatttcggctatgggttccccattggcggggtggct
gccatggatgtggataacggcggtgtcatctcacccggagggattggcttcgacattaac
tgtggcatgcgcctcattaaaacccatctcagctataaagaagttaaaccccacttgaaa
accctggtagaccggcttttcaagcaaataccggcgggagtgggaagcagcggtctactc
aaggtctcccggtctgaattccgccaggtctgtcaacagggtgcccgctggtgcgtacaa
caaggcctgggatgggaagaagacctagaacgcaccgaagaagggggactcattggcggt
gcggatccggctaagatcagcgaacgggccattgatcggggactcaaccaactagggact
ctaggctcaggcaatcattatcttgaaatccaggtcatccatccagaaaatatttatgat
ccagcactcgcccgtttttttggactggatctgccagaacaagtggtaatcatgttccat
tgtggcagccggggttttggccatcaggtggcgaccgattacctgcaacgattcctcaaa
gtgatgaccagcaaatacggcttagaagtccgggaccgggaactcgcctgcgcccccttc
cattcaccggaaggccaggactattttgcagcgatgaaatgcgccctcaatatgtccttc
gccaatcgacaagttattctacatcgagttcgggaggtcttttcagaggttttgggacgc
tcggcagaagatctcggcatgcacatgatttatgacgtcgcccataacacagcaaaatta
gaaccccatcaagtcaacggcaaacagcggaccttactggtccatcgcaaaggagccacc
cgggcctttggccctggcagacccgaacttccggagctctatcgccaagtgggccagcct
gtcatcattgggggcagcatggaaaccggctcttatttgctgattggcactccggacggc
gcccaaaccttttttagtaccgcccacggcagtggccgcaccatgagccgccgcaaagca
cgaaaacaatggcagggcgaggccttgctcagtcaactggaagaacggggcatttatatt
cgtagcgtctccaaacgaggggtggctgaagaagcaggtggagcttacaaggatattgat
gaggtggtgacagccacggatctcgccggcctcagcaaaccggtagtgcggtttatccct
attggcaacatcaaaggataa
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