Nitrosococcus halophilus: Nhal_2977
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Entry
Nhal_2977 CDS
T01198
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Nhal_2977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhl03400
]
Nhal_2977
Enzymes [BR:
nhl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Nhal_2977
DNA repair and recombination proteins [BR:
nhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Nhal_2977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
AAA_22
PIF1
Helicase_RecD
HHH_2
SLFN-g3_helicase
NTPase_1
TrwB_AAD_bind
nSTAND3
RsgA_GTPase
AAA_16
ABC_tran
AAA_17
AAA_28
AAA
AAA_14
cobW
TraI_hel_assoc_N
AAA_5
AAA_29
UvrD-helicase
SRP54
NPHP3_N
ATP_bind_1
ATPase_2
AAA_23
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ADE16037
UniProt:
D5BYP9
LinkDB
All DBs
Position
complement(3055869..3058061)
Genome browser
AA seq
730 aa
AA seq
DB search
MKPPLHSETPPEFLTGAVERVTFHSEENGFCVLRIKVRGERDLITVVGNTPTVTPGEYVE
CHGEWVNDRTHGLQFKTKHLRVIPPSTLEGIEKYLGSGMVKGIGPHFAKKLVQAFGEQVF
EVIEHESERLTELDGIGPKRKEQVIQAWAEQRVIRAIMVFLQSHGVGSARAVRIYKTYGD
KAIERVRENPYRLALDIHGIGFKTADRIAQRLGIPADSLIRAQAGVRHVLQEFANEGHCA
MEQGRLVETASQLLEIPAPIIEQAITQEVAEGQLIAEIIAGKPCLFLAPLYRSEIGVAKH
LQRLLRGVPPWGQINADKAIPWVEAKTGLLLSPSQRVALIQTINNKITVITGGPGVGKTT
VVNSILRIVRAKQTQVLLGAPTGRAAKRLAESTGLEAKTIHRLLEFDPHAMGFKHHAANP
LQADLIVIDEVSMVDVGLMNQLLQAIPNHAACILIGDKDQLPSVGPGQILADIIASQKIS
TVHLSEVFRQAASSKIVVNAHRINQGKMPEKADEAATLSDFYFIPTKSPETIQDRVLELV
TSRIPKRFGFDSTRDIQVLTPMNRGSLGARALNGLLQQQLNGQSQPKINRFGWSFAPGDK
VIQTVNNYDKEVFNGDIGRITRIALEEGLVHIDFDGREIEYELGELDEIALAYATSVHKS
QGSEYPAVVIPLAIQHYTLLQRNLLYTGITRGKRLVVLVGQPKALAIAVKRINSTARLTH
LSARLANSQI
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaagccccccctccactcagaaactccacccgaatttctcactggtgctgtagaacgc
gtcactttccatagtgaggaaaatggattttgtgtcctacgaattaaagtgcgtggtgag
cgggatctcatcaccgtggtcggcaataccccaacggtcacgccgggtgagtatgttgaa
tgccacggtgagtgggtcaacgaccgcacccatggtctccaatttaagaccaagcattta
agagttatccctcctagcaccctagaaggaatcgaaaaatatctaggctcaggaatggtc
aaaggaatcggtccccactttgccaagaaattggtacaagcctttggcgaacaggttttc
gaagtcatcgagcacgagtctgagcgcctcaccgaattagacggtatcggccccaaacgc
aaagaacaagtcattcaggcctgggcagaacagagggtcattcgagccatcatggtgttt
ctacaatcccatggagtgggtagcgccagggcagtccgtatttataaaacctatggcgac
aaagccatcgagcgggttcgcgaaaacccctaccgacttgcactcgatatccatggcatt
ggctttaaaactgccgataggattgcccaacggctgggaatccctgccgattctctcatc
cgcgcccaggcgggggttcgtcatgtgctccaggaatttgctaatgaaggacactgtgcc
atggaacagggacgattagtggaaacggctagccaattgctggaaatccccgcccctatc
attgaacaagccattactcaagaagtcgctgaaggacaactaatagccgagatcattgcg
ggcaaaccctgcctatttctagctccactttatcgatcagaaataggcgtggccaaacat
ttgcagcggcttctccgaggggtacccccctggggacaaattaatgccgataaagcgatc
ccctgggttgaagccaaaacaggattgttactctccccctctcaacgggttgcccttatt
caaacaatcaacaacaagatcaccgtcatcaccgggggacctggtgtcggcaaaaccacc
gtcgtcaacagcattctccgaattgttcgggccaagcaaacccaggtactcctgggggcc
ccgaccgggcgggcggcaaaacggctagccgaatccactggcctggaagccaaaacgatc
catcgtctgcttgaattcgatccccatgcaatgggtttcaagcaccatgcggccaacccc
cttcaagccgatctcatcgtcattgatgaggtttccatggtagacgtggggttgatgaat
caattgctccaagctattcctaatcatgcagcatgcatactgataggcgataaagaccag
ttaccttcggtgggacccgggcagatactcgcggatattatcgcctcccaaaaaatctcc
accgttcacctcagcgaagtctttcgccaggcagccagttccaagatcgtcgtcaatgcg
caccgaatcaatcaaggaaaaatgccagagaaagccgatgaagcggccacacttagcgac
ttctacttcattcccaccaaatctccagaaactatccaggatagggtgctggaattggta
accagccgtattcccaagcgtttcggatttgattctactcgcgacattcaagtccttacc
cccatgaatcggggcagtctcggtgcgcgagcactgaatgggctcttgcaacaacaactc
aatggacaatctcaacccaagatcaatcgctttggttggagctttgcccccggcgataag
gtcattcaaactgtcaataattatgacaaagaagtgtttaatggggatattggaaggata
accaggatagcccttgaggaaggactcgtacatatcgacttcgatggccgagagatagaa
tacgaattaggcgaacttgacgaaattgctttggcctatgccacctcggtgcacaagagc
caaggctcggaatatcccgcggtcgtcattcccctcgccattcaacattacaccctgtta
caaagaaacctgctttacaccggcattacccggggcaaacggctagtggtacttgtggga
caacctaaggccctcgccattgccgtcaaaaggatcaattcaaccgctcggctgacccat
ctttcagcccgattagctaacagtcaaatttaa
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