Nitrosococcus halophilus: Nhal_3397
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Entry
Nhal_3397 CDS
T01198
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03030
DNA replication
nhl03410
Base excision repair
nhl03420
Nucleotide excision repair
nhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Nhal_3397
03410 Base excision repair
Nhal_3397
03420 Nucleotide excision repair
Nhal_3397
03440 Homologous recombination
Nhal_3397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nhl03032
]
Nhal_3397
03400 DNA repair and recombination proteins [BR:
nhl03400
]
Nhal_3397
Enzymes [BR:
nhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Nhal_3397
DNA replication proteins [BR:
nhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Nhal_3397
DNA repair and recombination proteins [BR:
nhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Nhal_3397
NER (nucleotide excision repair)
GGR (global genome repair) factors
Nhal_3397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
HTH_23
HHH
IMS_HHH
HTH_11
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
ADE16429
UniProt:
D5C0V6
LinkDB
All DBs
Position
3495913..3498618
Genome browser
AA seq
901 aa
AA seq
DB search
MVKNSVLILIDGSSYLFRAFHALPPLTTSKGQPTGAVYGVINMLRKLLDEHQPHYVAVIF
DAKGKTFRDELFEQYKAHRPPMPEELACQIPPLHDLIRALGLPLLCVEGVEADDVIGTLA
QQASGQHLETLISSGDKDLAQLVNHHVSLVNSTNQSKLDPAGVKAKFNVSPEQIVDYLAL
VGDPIDNIPGIPGIGPKTAAKLLDQYHDLDQIMAHAQEIKGKVGENLRLHLAQLPLARQL
ATVRRDLPLELGPKDLQCQPPDIPTLRELYGTLEFKTWLRELLEKEKDRASSPNTSTDSS
PSYETVLSEESFERWVKRLETAELFAFDLETNSLDYIEAEIVGLSFAIKPKEAAYVPLAH
DYDAAPLQLAREGVLARLQPLLQDSNRGKVGQNLKFDRNVLANYGIELEGIRHDSMLESY
VLHSTASRHNMDSLALKYLQRSTISYEEVAGKGAKQLPFNQVPIDKATRYAAEDADICLQ
LHHYFWPRLQQEEALCRLYQELEIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIE
QEAFELAGEPFNLASPKQIQAILYDKLKLPITRKTPTGQPSTAETVLQELALDYPLPQLL
LEYRALSKLKSTYTDRLPLQVNPRTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSAEGR
RIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGEDIHQRTAAEIFRTPLE
GVTPEQRRSAKAINFGLIYGMSAHGLAQQLGISRSAAQHYIERYFHRYPGVKAYMDAICQ
QARQKGYVETLFGRRLYLPEIHSRQAQRRNQAERMAINAPMQGTAADIIKRAMLRADQWL
QKQGSNARMIMQVHDELVFEVAEAELDTTTAAIRENMAGAAQIKVPLIVEMGSGANWDEA
H
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaaaattcagttcttattctaatcgacggctcctcctatctctttcgcgctttc
cacgcgctgcctcccttaaccacttctaaaggccaacctacaggggcagtctacggagtc
ataaatatgctgcgcaagctgctcgatgagcaccaaccccactacgtcgcggtcatcttc
gatgccaagggcaaaacatttcgcgatgagctgtttgaacagtacaaggcccatcgcccc
cccatgcccgaggaacttgcctgccagatcccccccctccacgatctcatccgggccctc
ggtttacctttgctctgtgtggagggagttgaagccgacgatgtcatcggcaccttagcg
caacaagccagcgggcagcatctagagaccctgatttctagtggcgataaagacttggct
caactcgtcaaccaccacgtgagcctggtgaacagcacgaaccagtccaaattggatccc
gccggcgtaaaagccaagttcaacgtttccccagaacaaatcgtcgactacctggcgctg
gtgggcgatccgatagacaatatccccggcatccccggaataggccccaaaacggccgcc
aaactgcttgaccagtaccacgatctagaccaaatcatggcccacgcccaggaaatcaaa
ggcaaggtgggggaaaatctacgcctccatctggcccaacttcccctagcaaggcaattg
gccaccgttcgccgggatctcccccttgagctaggccctaaagacttgcaatgccagcca
cccgatatccccacgctacgggaactatatggcaccctggaattcaagacttggctgcgg
gaactcttggaaaaagagaaagatcgcgcctcgtcccctaacacctcaacggactcctct
ccctcctatgagacagtactttccgaggaaagcttcgagcgctgggtaaaacgcttggaa
accgccgaactattcgcctttgatttggaaaccaacagcttggactacatagaagctgaa
attgtcggtctctcttttgctatcaagccaaaggaggccgcttatgttccactcgctcat
gactatgatgccgcgcccctccagctagcccgtgaaggggttttagcacggctccagccc
ctgttacaagattcgaaccgggggaaagtgggacaaaacctcaagttcgatcgcaatgtg
ctggctaattatgggattgagctagagggcattcgccacgactccatgctggagtcctat
gtccttcacagtaccgccagccgtcacaatatggattctttagccctcaagtacctccaa
cggagcaccatttcctatgaagaagtggctggcaaaggagccaagcaactgcccttcaat
caggttcccattgacaaggccacccgctacgcggcggaagatgccgacatctgcctccaa
cttcaccactacttctggccccgcctccaacaggaggaggccctctgccgtctttaccaa
gagctggaaatccccctcattccggtgatttcacgcatggagcgcaatggggtccagata
gacgcgacccagcttaaagcccatagcgcggaactcacggcccgcctggaaaaaattgag
caagaagcctttgaacttgccggggagccttttaatctcgcctcgcccaagcaaattcag
gccatcctctacgataagctgaaactgccgattacccgcaaaacccccaccggacaaccc
tccacggcagagacggtattacaggaattggccctggattatcccctcccccaattgctc
ctcgaatatcgcgccttaagcaagctcaagtctacctatacggatcgcttgcctttgcaa
gtcaacccccgtacagggcgcgtccatacctcctaccatcaagccgtcaccgccaccgga
cggctttcctcctcggatcccaacttacagaatatccccattcgcagcgctgaaggccga
cggattcgccaggcctttatcgccccgccaggctattgcctcctggccgccgactactcc
cagattgaactgcgcattatggcccatctttccgacgatgaaggcctgcttgccgccttc
gaagcgggagaggacatccaccaacggactgccgccgaaattttccgcactcccttagaa
ggagtgaccccagagcagcggcgcagcgccaaggccatcaattttggcctgatctatggg
atgtcagcccacggtcttgcccagcagctaggaatcagccgcagcgccgcgcaacactac
atagaacgctattttcaccgttaccccggcgttaaggcctacatggatgccatatgccag
caagcccgccaaaagggatatgtggaaaccctattcggccggcgtctttatctccctgaa
atccactcccggcaagcgcaacgacgcaaccaggccgaacgcatggcgattaatgccccc
atgcaaggcacggcggcagatatcatcaagcgagccatgctccgtgcggatcagtggctg
caaaaacagggaagcaatgcccgcatgatcatgcaggttcacgatgaattggtatttgag
gttgccgaagctgaattggacaccaccaccgcagccatccgggaaaacatggccggagcc
gcccaaattaaggtgccgctcatagtagagatgggtagcggcgccaactgggacgaagcc
cattaa
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