Nitrosococcus halophilus: Nhal_3417
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Entry
Nhal_3417 CDS
T01198
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nhal_3417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhl03019
]
Nhal_3417
03009 Ribosome biogenesis [BR:
nhl03009
]
Nhal_3417
Enzymes [BR:
nhl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Nhal_3417
Messenger RNA biogenesis [BR:
nhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Nhal_3417
Ribosome biogenesis [BR:
nhl03009
]
Prokaryotic type
rRNA processing factors
Nhal_3417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ADE16446
UniProt:
D5C194
LinkDB
All DBs
Position
complement(3517202..3519559)
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AA seq
785 aa
AA seq
DB search
MKRMLINATHAEELRVAMVDGQHLQDLDIENPAREQKKANVYKGKITRIEPSLEAVFVDY
GADRQGFLPLKEVARGYFQPHQGEPGERLKVQEVLKEGQELLVQVEKEERGNKGAALSTF
VSLAGRYLVLMPNNPRAGGVSRRIEGEERSALLEAMRALEVPEGMGLIARTAALGKSTEE
LQWDLNYLLHLWQAIQVAAQERPAPFLIYQESDVIIRALRDYLRLDVGEILIDTPDVYQR
AYDFMRQVMPHELQKLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVIDYTEALT
TIDINSARANKGEDIEETALSTNLESAEEIARQLKLRDLGGLIVIDFIDMAPLRNQRAVE
NRLRECLREDRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCSGRGHVRGVESLG
LSVLRLVEEGAAKEKTARMVVQLPISVASFLLNEKRTNLATIEKRYEVHLFLVPNPHLET
PAFKIERVKDKGKEEGRTDKRLEMQSYQMANEPESKNLVFAAPSVAPDQPLVKGVSPSLP
PPGPKPAAPAAQPHFLRHFWKVLIGGEQEPEAPEVSNQETAATPGEPSRQERVASRRGRS
HGRGRRSSGRRQNRRENTQSKEVSPEVGSVQPAPEVKETQERQKSGESTSSRSSTRGRRG
GRRSRSSAANRHRHSSSGSRGDGAAGKQPKETGNAEKNPALSSELKEASSKSPPETAVSK
EKKASSEEGQGGGSRESISPGPAKVVAANERAVVAEEAPKLPAPISVVEEQTQMLPPAVR
KESSG
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttattaatgcaactcatgcggaagagttgcgagtggcgatggtcgat
ggccagcacttgcaagatttagatattgaaaatccggctcgggaacagaaaaaagccaat
gtttataagggcaaaattactcggattgaaccgagtttagaggccgtattcgtagattat
ggtgctgatcgccaggggtttttacctctcaaggaggtggcgcgcggctattttcagccc
catcaaggagaacctggggagcgacttaaagtccaagaagtgctcaaggaagggcaagag
ttactcgtccaggtggaaaaggaggagcggggtaataaaggggccgcgctttctacgttt
gtgagtctggcggggcggtatcttgtattgatgcccaacaaccctagggctgggggagtt
tctcgtcggatcgaaggggaagagcgaagcgcgcttttagaagcaatgcgtgctcttgag
gtgcctgagggcatggggcttattgctcggactgcggctctaggtaagagcacggaagaa
ttgcagtgggaccttaattatttgctccatctttggcaggctatccaggtcgccgctcaa
gagcggccagcgcctttcctcatttatcaggaaagcgatgtcattattcgcgcattacgg
gattacttgcgcttagatgttggcgaaatcctgatcgataccccggatgtctatcagcgg
gcttatgatttcatgcggcaagtgatgccccatgagttgcagaagcttaagctctaccaa
gataaggtttccctgttcacccgctttcaaattgagagccaaatcgaaactgcattccag
catgaggttgcgctaccttccggtggtgcaatcgtcatcgattacaccgaggccctgacc
accatcgatatcaactcagcgcgggcgaataagggggaggatattgaggagacggcgctt
tcaaccaacttagaatcggcggaggagatagcacgccagttaaaattacgtgatttgggg
ggattgattgttatcgactttatcgatatggcccccttacgtaaccagcgggcggttgag
aatcggctgcgggagtgcttgcgtgaagatcgggcgcgggtacaagtgggtcgtatttcc
agatttgggcttctagagatgtcgcggcaacggttgcgaccgtctctaggggaagcccat
caggtggtctgcccccgttgtagtggccggggtcatgtgagaggggtagaatccctgggt
ctatcggttttgcgccttgtcgaggaaggggcagctaaagaaaagaccgctcgcatggtg
gttcaacttcctatttcagtggcttcctttttgctcaacgagaagcgaaccaaccttgcc
accattgaaaagcgatatgaggtgcatttatttttagtgcctaatccccatctggaaacc
cctgctttcaaaattgagcgagttaaggacaaggggaaagaagaggggcggacggataaa
cggcttgaaatgcaaagctaccagatggcgaatgaaccggagtctaagaatctggtgttt
gccgcacctagcgttgctccggatcagcccttggttaaaggggtttctccctcgcttccc
ccgcctggaccgaaaccagcggcaccggctgctcaacctcactttttaaggcatttctgg
aaggtgctgatagggggcgagcaagagccagaagcaccggaggtatcgaatcaggagact
gcagcaactcctggagagccgagtagacaggagcgtgtggcttctcgccgtgggagatcc
catggtagggggcgacgcagttcgggtcggaggcaaaatcgcagggaaaatacccagagc
aaggaagtttctccagaggtggggagtgttcaaccggcacccgaagtcaaggaaacccag
gagaggcagaaatctggggaaagcacctcctcaaggagctccacccgggggcgccggggg
ggtcgccgttctcgctccagtgcagccaataggcaccgtcacagcagcagcgggagtaga
ggtgatggggcagcagggaagcaacctaaagaaacgggaaatgctgaaaaaaaccctgcg
ctttcttcagagttaaaagaggcttcctccaaatcgcctccagagacagccgtttccaag
gagaaaaaagcctcctcggaggaggggcaagggggaggttcccgggaatcgatatctcct
gggccggcaaaggtggtggcggcgaatgagcgggcggtcgttgccgaagaggcgccaaaa
ttgcctgcacccatctccgtggtggaagaacagacacaaatgttgcctcccgcagtgagg
aaagagtcttccggttag
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