Nitrosococcus halophilus: Nhal_3500
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Entry
Nhal_3500 CDS
T01198
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nhal_3500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhl03019
]
Nhal_3500
03009 Ribosome biogenesis [BR:
nhl03009
]
Nhal_3500
Enzymes [BR:
nhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nhal_3500
Messenger RNA biogenesis [BR:
nhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nhal_3500
Ribosome biogenesis [BR:
nhl03009
]
Prokaryotic type
rRNA helicases
Nhal_3500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UvrA_inter
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ADE16524
UniProt:
D5C1H2
LinkDB
All DBs
Position
3603099..3604613
Genome browser
AA seq
504 aa
AA seq
DB search
MASSPEALSFDGFAISAPILQAIKQVGYETPTQIQARAIPHLLAGCDLMGQAQTGTGKTA
AFAIPILNRLALTRKEPQALVLVPTRELAIQVAEAFQTYARYLEDFRVLPIYGGQSMGNQ
LRQLKRGVHVIVGTPGRIMDHLRRKSLLLDKLTTVVLDEADEMLKMGFIEDVEWILGQMP
AKRQTALFSATMPSSVRHIASRHLHSPHDIKIKGKTASLPAINQRYCLVSDFHKLDALTR
MLEVEEYDATIIFVRTKIATEELAKKLSARGYAAAALNGDMAQAQREKVVGQLKKNTLDI
IVATDVAARGLDVKRISHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLS
AIKKVTGQPLYEMPLPSHQKIIDRRIEQFKQQVMGTLEREDLAEFRHLVQQWVEQENLSP
LDVAAALTYSMQRERPLVKPPLAESANHDKALQRPVKKKAKKMSALKTTRRSETKNKKFH
KKTIKKQKDFRHSYFNNSHHLSTP
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttctccagaagccctatcttttgatggctttgctatcagcgcccctattctg
caagccatcaaacaggtagggtacgaaacccctacccagattcaagcaagggcaatccct
catcttttagcaggctgtgacctcatggggcaggcccaaaccggcacgggtaaaaccgca
gcatttgctattcctattttgaaccgactggcattgacgcggaaagagccccaagcgctg
gtgttagttccaacgcgggagctcgccattcaagtggcagaggcattccaaacctatgcc
cggtatctggaagactttcgtgtccttcccatttacggcggccaatccatgggaaatcag
ttgcgccaactgaaacggggcgttcacgtcatcgtagggaccccaggcagaattatggat
cacctgcggcgcaaaagtctgctcctagataagttgacgacggtagtcttagacgaagcc
gatgaaatgctaaaaatggggtttatcgaagatgtggagtggattctgggacaaatgcct
gcgaagcggcagacggcacttttttccgcaaccatgccgagttccgttcgtcatatcgca
agccgccacttgcatagcccccatgatataaaaattaagggaaaaaccgcctccctcccc
gccatcaatcagcgctattgcctagtctccgattttcataaattagatgcgcttacccgg
atgctagaggtggaagaatatgatgccacgattatctttgttcgcaccaagattgcgacg
gaagagctggcaaaaaagctgtcggcacggggctatgcggcagcagcactgaatggggat
atggcccaggcgcagcgggaaaaggtcgtcggacagctcaaaaaaaatactctcgacatc
attgtcgccactgatgtggccgcccgtggcttggatgtgaagcgaatcagccatgtcgtc
aattacgacattccctacgataccgggacttatatccaccgtattggccgtacgggtcgc
gcaggccgcaccgggacagccaccctgttcgttgccccccgcgaacggcggatgttgagc
gctatcaaaaaagtaacgggacaacccctttatgaaatgccattacccagtcaccagaaa
atcatagaccggcgtattgaacaatttaaacaacaggttatgggaaccttggaaagggaa
gatctggctgaattccgccacttggtgcaacaatgggttgaacaggaaaatctctccccg
ttggatgtagccgcggcattgacctattccatgcaacgcgaacgtccgttagtcaagcct
ccgctagcggaatcggctaaccatgataaagcacttcagcggccggttaagaaaaaggcc
aaaaaaatgtccgctttaaagacaacaagaagaagcgagacaaaaaacaagaaattccat
aaaaagacgatcaaaaaacaaaaagattttcgtcattcttatttcaacaacagccaccac
ctttccaccccctag
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